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News 2024-01-19
Congratulations! Dr. Yao-Cheng Lin was promoted to Associate Research Fellow on January 15, 2024.

Published Papers (2022-11-30)
Complete Genome Sequence Resource of Pectobacterium colocasium strain F1-1 that Causes Soft Rot Disease of Taro
Plant Disease
Research Findings (2022)
Breakthrough of wild tomato protoplast regeneration and DNA-free CRISPR-Cas9 genome editing.
Published Papers (2022)
Whole genome resequencing and complementation tests reveal candidate loci contributing to bacterial wilt (Ralstonia sp.) resistance in tomato
Scientific Reports
Published Papers (2022)
Toward automatic plant phenotyping: starting from leaf counting
Multimedia Tools and Applications
Published Papers (2022)
DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato Solanum peruvianum using protoplast regeneration
Plant Physiology
Research (2022)
Breakthrough of wild tomato protoplast regeneration and DNA-free CRISPR-Cas9 genome editing.
Plant Physiology, Volume 188, Issue 4, April 2022, Pages 1917–1930

Published Papers (2019)
Draft Genome Assembly of the False Spider Mite Brevipalpus yothersi
Microbiology Resource Announcements
Published Papers (2019)
Reference genome for the WHO reference strain for Mycobacterium bovis BCG Danish, the present tuberculosis vaccine
BMC Genomics
Published Papers (2019)
Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos
SCIENTIFIC REPORTS
Published Papers (2018)
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Published Papers (2017)
Systems genetics reveals a transcriptional network associated with susceptibility in the maize-gray leaf spot pathosystem
The Plant journal : for cell and molecular biology
Published Papers (2017)
The Apostasia genome and the evolution of orchids
Nature
Published Papers (2017)
Complete Genome Sequence of Bacillus cereus C1L, a Plant Growth-Promoting Rhizobacterium from the Rhizosphere of Formosa Lily in Taiwan
Genome Announcements
Published Papers (2017)
Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips
IMA Fungus
Published Papers (2016)
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea
Nature
Published Papers (2015)
The Plant Genome Integrative Explorer Resource: PlantGenIEorg
The New phytologist
Published Papers (2015)
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)
PloS one
Published Papers (2015)
Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in picea gene families
Genome Biology and Evolution
Published Papers (2015)
Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays
Journal of Experimental Botany
Published Papers (2015)
Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda)
BMC genetics
Published Papers (2014)
miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns
Tree Genetics & Genomes
Published Papers (2014)
Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations
Nature communications
Published Papers (2014)
in aComparative in silico analysis of EST-SSRsngiosperm and gymnosperm tree genera
BMC Plant Biology
Published Papers (2013)
The Norway spruce genome sequence and conifer genome evolution
Nature
Published Papers (2013)
The biosynthetic gene cluster for sophorolipids: a biotechnological interesting biosurfactant produced by Starmerella bombicola
Molecular microbiology
Published Papers (2013)
SILAC-based proteome analysis of Starmerella bombicola sophorolipid production
Journal of proteome research
Published Papers (2013)
Pan genome of the phytoplankton Emiliania underpins its global distribution
Nature
Published Papers (2013)
Candida bombicola as a platform organism for the production of tailor-made biomolecules
Biotechnology and bioengineering
Published Papers (2012)
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen
The New phytologist
Published Papers (2012)
GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses
Developmental cell
Published Papers (2012)
A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust)
Molecular plant-microbe interactions : MPMI
Published Papers (2011)
Obligate biotrophy features unraveled by the genomic analysis of rust fungi
Proceedings of the National Academy of Sciences of the United States of America
Published Papers (2011)
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine
BMC Genomics
Published Papers (2009)
Open access to sequence: browsing the Pichia pastoris genome
Microbial cell factories
Published Papers (2009)
Oil bodies and oleosins in Physcomitrella possess characteristics representative of early trends in evolution
Plant Physiology
Published Papers (2009)
Genome sequence of the recombinant protein production host Pichia pastoris
Nature biotechnology
Published Papers (2008)
The Rice Annotation Project Database (RAP-DB): 2008 update
Nucleic acids research
Published Papers (2008)
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
Nature
Published Papers (2007)
Detection of SNPs between Tainung 67 and Nipponbare rice cultivars
Botanical Studies
Published Papers (2007)
Curated genome annotation of Oryza sativa ssp japonica and comparative genome analysis with Arabidopsis thaliana
Genome Research
Published Papers (2007)
A rice phenomics study--phenotype scoring and seed propagation of a T-DNA insertion-induced rice mutant population
Plant Molecular Biology
Published Papers (2007)
A rice gene activation/knockout mutant resource for high throughput functional genomics
Plant Molecular Biology
Published Papers (2007)
A repetitive sequence specific to Oryza species with BB genome and abundant in Oryza punctata
Botanical Studies
Published Papers (2005)
The map-based sequence of the rice genome
Nature
Published Papers (2021)
Efficient and Economical Targeted Insertion in Plant Genomes via Protoplast Regeneration
The CRISPR Journal
Published Papers (2021)
Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker Bacterium Xanthomonas citri subsp citri
Frontiers in Microbiology
Faculty
Kuo-Chen Yeh Yu-Liang Yang Hsin-Hung Yeh Lie-Fen Shyur Tzyy-Jen Chiou Yee-yung Charng Wen-Chin Yang Pei-Wen Hsiao Ming-Tsair Chan Su-Chiung Fang Yet-Ran Chen Ho-Ming Chen Ming-Jung Liu Der-Fen Suen Cheng-Hsun Ho Yao-Cheng Lin Masashi Yamada Yu-Ling Lin Jer-Young Lin Tai-Na Wu Hui-Ming Chen Yun-Chu Chen Choun-Sea Lin Swee-Suak Ko Yu-Chuan Liang Chii-Gong Tong Lin-Yun Kuang Sychyi Cheng
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