Published Papers

Su, H.; Huang, M.-Z.; Chou, J.-H.; Chang, T.-H.; Jiang, Y.-M.; Cho, Y.-T.; Cheng, S.-C.; Wu, M.-T.; Shiea, J.* (2018) High-throughput screening of phthalate-containing objects in the kindergartens by ambient mass spectrometry. Anal. Chim. Acta, 1039, 65-73
Cheng, S.-C.*; Bhat, S. M.; Lee, C.-W.; Shiea, J.* (2018) Thin Layer Chromatography Combined with Electrospray Ionization Mass Spectrometry for Characterizing Herbal Compounds. Int. J. Mass Spectrom, 434, 264-271
Liu, M. J.*, Sugimoto, K., Uygun, S., Panchy, N., Campbell, M. S., Yandell, M., G. A. Howe and Shiu, S. H.* (2018) Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato. Plant Cell, 30(7), 1445-1460
Yang, C.-C., Chang, C.-K., Chang, M.-T. , and Shyur, L.-F.* (2018) Plant galactolipid dLGG suppresses lung metastasis of melanoma through deregulating TNF-alpha-mediated pulmonary vascular permeability and circulating oxylipin dynamics in mice. International Journal of Cancer, 143, 3248–3261
Sheng-Yen Lin, Sung-Yuan Hsieh, Yi-Ting Fan, Wen-Chi Wei, Pei-Wen Hsiao, Dai-Hua Tsai, Tzong-Shoon Wu, and Ning-Sun Yang* (2018) Necroptosis promotes autophagy-dependent upregulation of DAMP and results in immunosurveillance. Autophagy, 14(5), 778-795
Chen LY, Wang XQ, Wang YM, Geng X, Xu XN, Su C, Yang YL, Tang YJ, Bai FW, Zhao XQ* (2018) Genome mining of Streptomyces xinghaiensis NRRL B-24674(T) for the discovery of the gene cluster involved in anticomplement activities and detection of novel xiamycin analogs. Applied microbiology and biotechnology, 102(22), 9549-9562
Chen PY, Hsieh CY, Shih CJ, Lin YJ, Tsao CW, Yang YL* (2018) Exploration of Fungal Metabolic Interactions Using Imaging Mass Spectrometry on Nanostructured Silicon. Journal of Natural Products, 81(7), 1527-1533
Jiang JZ, Kuo CH, Chen BH, Chen MK, Lin CS, Ho SL (2018) Effects of OsCDPK1 on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds. International Journal of Molecular Sciences, 19(10), 3247
Chao YT, Chen WC, Chen CY, Ho HY, Yeh CH, Kuo YT, Su CL, Yen SH, Hsueh HY, Yeh JH, Hsu HL, Tsai YH, Kuo TY, Chang SB, Chen KY, Shih MC (2018) Chromosome-level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding. Plant Biotechnology Journal, 16(12), 2027-2041
Lin C, Tsai CH, Chen PY, Wu CY, Chang YL, Yang YL, Chen YL* (2018) Biological control of potato common scab by Bacillus amyloliquefaciens Ba01. PloS one, 13(4), e0196520
Liao CC, Ho MY, Liang SM, Liang CM (2018) Autophagic degradation of SQSTM1 inhibits ovarian cancer motility by decreasing DICER1 and AGO2 to induce MIRLET7A-3P. Autophagy, 14(12), 2065-2082
Lin CS, Hsu CT, Yang LH, Lee LY, Fu JY, Cheng QW, Wu FH, Hsiao HC, Zhang Y, Zhang R, Chang WJ, Yu CT, Wang W, Liao LJ, Gelvin SB, Shih MC (2018) Application of protoplast technology to CRISPR/Cas9 mutagenesis: from single-cell mutation detection to mutant plant regeneration. Plant Biotechnology Journal, 16(7), 1295-1310
Chen SR, Wang SW, Su CJ, Hu HC, Yang YL, Hsieh CT, Peng CC, Chang FR, Cheng YB* (2018) Anti-Lymphangiogenesis Components from Zoanthid Palythoa tuberculosa. Marine Drugs, 16(2), E47
Tsao CW*, Lei IC, Chen PY, Yang YL (2018) A piezo-ring-on-chip microfluidic device for simple and low-cost mass spectrometry interfacing. The Analyst, 143(4), 981-988
Suen Der-Fen, Schmidt Wolfgang (2018) OTU5 tunes environmental responses by sustaining chromatin structure. Plant Signaling & Behavior, 13(4), e1435963
Suen Der-Fen, Tsai Yi-Hsiu, Cheng Ya-Tan, Radjacommare Ramalingam, Ahirwar Ram Nivas, Fu Hongyong, Schmidt Wolfgang (2018) The Deubiquitinase OTU5 Regulates Root Responses to Phosphate Starvation. Plant Physiology, 176(3), 2441-2455
Kah Wee Koh, Shu-Hong Lee, Ho-Ku Chen, Chia-Yen Chang, and Ming-Tsair Chan* (2018) Phalaenopsis flowering locus VE regulates floral organ maturation. Plant Cell Reports, 37(3), 467-482
Lin, W.-Y., Lin, Y.-Y., Chiang, S.-F., Syu, C. Hsieh, L.-C.*, Chiou, T.-J.* (2018) Evolution of microRNA827 targeting in the plant kingdom. New Phytologist, 217, 1712-1725
S. Kailasam, Y. Wang, J.-C. Lo, H.-F. Chang and K.-C. Yeh* (2018) S-nitrosoglutathione works downstream of nitric oxide to mediate iron deficiency signaling in Arabidopsis. Plant Journal, 94(1), 157-168
K. S. Hung, C. C. Hsiao, T. W. Pai*, C. H. Hu, W. S. Tzou, W. D. Wang and Y. R. Chen (2018) Functional enrichment analysis based on long noncoding RNA associations. BMC SYSTEMS BIOLOGY, 12(Suppl 4), 45
Rytz TC, Miller MJ, McLoughlin F, Augustine RC, Marshall RS, Juan YT, Charng YY, Scalf M, Smith LM, Vierstra RD* (2018) Sumoylome profiling in Arabidopsis reveals a diverse array of nuclear targets modified by the sumo ligase SIZ1 during heat stress. Plant Cell, 30(5), 1077-1099
Hsu, S.-F., Lee, Y.-B., Lee, Y.-C., Chung, A.-L., Apaya, K. M., Shyur, L.-F., Cheng, C.-F., Ho, F.-M., and Meng, T.-C. (2018) Dual specificity phosphatase DUSP6 promotes endothelial inflammation through inducible expression of ICAM-1. The FEBS Journal, 285(9), 1593-1610
Kuo, H.-F., Hsu, Y.-Y., Lin, W.-C., Chen, K.-Y., Munnik, T., Brearley, C.*, Chiou, T.-J.* (2018) Arabidopsis inositol phosphate kinases, IPK1 and ITPK1, constitute a metabolic pathway in maintaining phosphate homeostasis. Plant Journal, 95(4), 613–630
Leong, S. J., Lu, W.-C., Chiou, T.-J.* (2018) Phosphite-Mediated Suppression of Anthocyanin Accumulation Regulated by Mitochondrial ATP Synthesis and Sugars in Arabidopsis. Plant & Cell Physiology, 59, 1158-1169
Hsiang-Yin Lin, Jhun-Chen Chen, Su-Chiung Fang * (2018) A protoplast transient expression system to enable molecular, cellular, and functional studies in Phalaenopsis orchids. Frontiers in Plant Science, 9: 1-13.
Chen, M., Lin, J.Y., Hur, J., Pelletier, J.M., Baden, R., Pellegrini, M., Harada, J., Goldberg, R.B* (2018) Seed genome hypomethylated regions are enriched in transcription factor genes. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 115(35), E8315-E8322
van der Touw, W, Kang, K., Luan, Y., Ma, G., Mai, S., Qin, L., Bian, G., Mungamuri, S. K., Zhang, R., Hu, H.M., Zhang, C.C., Aaronson, S.A., Feldmann, M., Yang, W.C., Chen, S.H.*, and Pan, P.Y. (2018) Glatiramer acetate enhances myeloid-derived suppressor cell function via recognition of paired Ig-like receptor B. JOURNAL OF IMMUNOLOGY, 201(6), 1727-1734
Liu HC, Lämke J, Lin SY, Hung MJ, Liu KM, Charng YY*, Bäurle I* (2018) Distinct heat shock factors and chromatin modifications mediate the organ‐autonomous transcriptional memory of heat stress. Plant Journal, 95(3), 401-413
Chien, P.-S., Chiang, C.-P., Leong, S. J. and Chiou, T.-J.* (2018) Sensing and Signaling of Phosphate Starvation: From Local to Long Distance. Plant & Cell Physiology, 59(9), 1714-1722
Chang, L., Chang, H.H., Chang, J.C., Lu, H.C., Wang, T.T., Hsu, D.W., Tzean, Y., Cheng, A.P., Chiu, Y.S., and Yeh, H.H.* (2018) Plant A20/AN1 protein serves as the important hub to mediate antiviral immunity. PLOS Pathogens, 14(9) e1007288
Tien-Jen Lin, Shu-Yi Yin, Pei-Wen Hsiao, Ning-Sun Yang and I-Jen Wang* (2018) Transcriptomic analysis reveals a controlling mechanism for NLRP3 and IL-17A in dextran sulfate sodium (DSS)-induced colitis. Scientific Reports, 8, 14927
Lin, Y.-C., Wang, J., Delhomme, N., Schiffthaler, B., Sundström, G., Zuccolo, A., Nystedt, B., Hvidsten, T. R., de la Torre, A., Cossu, R. M., Hoeppner, M. P., Lantz, H., Scofield, D. G., Zamani, N., Johansson, A., Mannapperuma, C., Robinson, K. M., Mähler, N., Leitch, I. J., Pellicer, J., Park, E.-J., Van Montagu, M., Van de Peer, Y., Grabherr, M., Jansson, S., Ingvarsson, P. K. and Street, N. R. (2018) Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 115(46), E10970-E10978 DOI
Sheue-Fen Tzeng, Chin-Hsien Tsai, Tai-Kuang Chao, Yu-Ching Chou, Yu-Chih Yang, Mong-Hsun Tsai, Tai-Lung Cha, and Pei-Wen Hsiao* (2018) O-Glycosylation–mediated signaling circuit drives metastatic castration-resistant prostate cancer. FASEB JOURNAL, 32, 6869-6882
Chen G.-H., Liu M.-J., Xiong Y., Sheen J. and Wu S.-H.* (2018) TOR and RPS6 transmit light signals to enhance protein translation in deetiolating Arabidopsis seedlings. Proc Natl Acad Sci USA, 115(50), 12823-12828.
Cheng-Ying Shen, Ya-Chu Chang, Li-Han Chen, Wen-Chun Lin, Yung-Hua Lee, Shu-Tsen Yeh, Hsin-Kuang Chen, Wentao Fang, Chung-Ping Hsu, Jang-Ming Lee, Tzu-Pin Lu, Pei-Wen Hsiao, Liang-Chuan Lai, Mong-Hsun Tsai* and Eric Y. Chuang* (2018) The extracellular SEMA domain attenuates intracellular apoptotic signaling of semaphorin 6A in lung cancer cells. Oncogenesis, 7(12), 95
Chiu YS, Chen PY, Kuan T, Wang PC, Chen YJ, Yang YL*, Yeh HH* (2018) A polysaccharide derived from Trichosporon sp. culture strongly primes plant resistance to viruses. Molecular plant-microbe interactions : MPMI, 31(12), 1257-1270
Chiu, Y.S., Chen, P.Y., Kuan, T., Wang, P.C., Chen, Y.J., Yang, Y.L., and Yeh. H.H.* (2018) A polysaccharide derived from Trichosporon sp. culture strongly primes plant resistance to viruses. MOLECULAR PLANT-MICROBE INTERACTIONS, 31(12), 1257-1270
Lin CS*, Hsu CT, Yang LH, Lee LY, Fu JY, Cheng QW, Wu FH, Hsiao HC, Zhang Y, Zhang R, Chang WJ, Yu CT, Wang W, Liao LJ, Gelvin SB, Shih MC (2018) Application of protoplast technology to CRISPR/Cas9 mutagenesis: From single cell mutation detection to mutant plant regeneration. Plant Biotechnology Journal, 16, 1295-1310
Tung HY, Chen WC, Ou BR, Yeh JY, Cheng YH, Tsng PH, Hsu MH, Tsai MS, Liang YC. (2018) Simultaneous detection of multiple pathogens by multiplex PCR coupled with DNA biochip hybridization. Laboratory animals, 52(2), 186-195.
Chen Y-C*, Holmes EC*, Rajniak J, Kim J-G, Tang S, Fischer CR, Mudgett MB, Sattely ES (2018) N-hydroxy-pipecolic acid is a mobile metabolite that induces systemic disease resistance in Arabidopsis. Proc Natl Acad Sci U S A, 115, E4920-E4929
Dubrow Z, Sunitha S, Kim JG, Aakre C, Girija AM, Sobol G, Teper D, Chen Y-C, Ozbaki-Yagan N, Vance H, Sessa G, Mudgett MB (2018) Tomato 14-3-3 proteins are required for Xv3 disease resistance and interact with a subset of Xanthomonas euvesicatoria effectors. Mol. Plant-Microbe Inter, 31, 12, 1301-1311
Hsu F. M., Gohain M., Allishe A., Huang Y.J., Liao J.L., Kuang L.Y. and Chen P.Y. (2018) Dynamics of the Methylome and Transcriptome during the Regeneration of Rice. Epigenomes 2(3):, 14