Published Papers

Huang Chien-Jui, Wu Ting-Li, Zheng Po-Xing, Ou Jheng-Yang, Ting Chao-Ling, Lin Yao-Cheng* (2022) Complete Genome Sequence Resource of Pectobacterium colocasium strain F1-1 that Causes Soft Rot Disease of Taro. Plant Disease,
Wu KS, Sung SY, Huang MH, (Lin YL), Chang CC, Fang CL, Wong TT, Chen HH, Tsai ML (2022) Clinical and molecular features in medulloblastomas subtypes in children in a cohort in Taiwan. CANCERS, 14 (21), 5419
Hung-Chi Liu, Hsiu-Chen Chen, Tzu-Hsiang Huang, Wei-Ling Lue, Jychian Chen, (Der-Fen Suen*) (2022) Cytosolic Phosphoglucose Isomerase is Essential for Microsporogenesis and Embryogenesis in Arabidopsis. PLANT PHYSIOLOGY,
Val-Torregrosa Beatriz, Bundó Mireia, Mallavarapu Mani Deepika, (Chiou Tzyy-Jen), Flors Victor, San Segundo Blanca* (2022) Loss-of-function of NITROGEN LIMITATION ADAPTATION confers disease resistance in Arabidopsis by modulating hormone signaling and camalexin content. Plant Science, 323, 111374
Yen-Ning Chen, Heather Cartwright, Cheng-Hsun Ho* (2022) In vivo visualization of nitrate dynamics using a genetically encoded biosensor. BioRxiv, preprint doi:
Hsin-Yi Chen, Shu-Jou Chan, Xinxin Liu, An-Chi Wei, Ru-In Jian, Kuan-Wei Huang, Yaw-Dong Lang, Jou-Ho Shih, Chun-Chieh Liao, Chiu-Lin Luan, Yu-Tung Kao, Shang-Yin Chiang, (Pei-Wen Hsiao), Yuh-Shan Jou, Yunching Chen & Ruey-Hwa Chen* (2022) Long noncoding RNA Smyca coactivates TGF-β/Smad and Myc pathways to drive tumor progression. JOURNAL OF HEMATOLOGY & ONCOLOGY, 15, 85
Yao-Pin Lin*, Yu-Yen Shen, Yen-Bin Shiu, (Yee-yung Charng), Bernhard Grimm (2022) Chlorophyll dephytylase 1 and chlorophyll synthase: a chlorophyll salvage pathway for the turnover of photosystems I and II. Plant Journal, 111, 979-994
林嘉音、葉信宏、葉國楨、常怡雍* (2022) 植物逆境反應的預啟 (Priming) 與記憶. Chemistry & Food Science, 60(02), 68-72
Ochatt, S.J., Beruto, M.I., Chan, M.T., Prestwich, B.M.D., Eimert, K., Maurizio Lambardi, M., and Winkelmann, T. (2022) Biotechnology of ornamental plants: when beauty joins science—preface from the editors.. Plant Tissue and Organ Culture, 149, 497-502
K. T. Fan, C. W. Hsu and Y. R. Chen* (2022) Mass spectrometry in the discovery of peptides involved in intercellular communication: From targeted to untargeted peptidomics approaches. MASS SPECTROMETRY REVIEWS, 2022, e21789
3.Chiu, C.W., Li, Y.R., Lin, C.Y., Yeh, H.H., and Liu, M.J. (2022) Translation initiation landscape profiling reveals hidden open reading frames required for the pathogenesis of tomato yellow leaf curl Thailand virus. PLANT CELL, 34(5), 1804-1821
B. H. Cheah, P.-C. Liao, J.-C. Lo, Y.-T. Wang, I-C. Tang, K.-C. Yeh, D.-Y. Lee, Y.-F. Lin* (2022) Insight into the mechanism of indium toxicity in rice. Journal of Hazardous Materials, 429, 128265
Pei-Shan Chien, Ya-Ting Chao, Chia-Hui Chou, Yu-Ying Hsu, Su-Fen Chiang, Chih-Wei Tung*, Tzyy-Jen Chiou* (2022) Phosphate transporter PHT1;1 is a key determinant of phosphorus acquisition in Arabidopsis natural accessions. Plant Physiology,
Wu KS, Jian TY, Hsieh CL, Sung SY, Huang MH, Fang CL, Wong TT*, (Lin YL)* (2022) Subgroup-specific B cell enrichment in Group 4 medulloblastoma in children. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 23 (9), 5287
Hsin-Ying Lin, Chun-Jung Ko, Tzu-Yu Lo, Shang-Ru Wu, Shao-Wei Lan, Chen-An Huang, Yi-Chin Lin, Hsin-Hsien Lin, Hsin-Fang Tu, Cheng-Fan Lee, (Pei-Wen Hsiao), Hsiang-Po Huang, Mei-Jou Chen, Kai-Hsiung Chang & Ming-Shyue Lee* (2022) Matriptase-2/NR4A3 axis switches TGF-β action toward suppression of prostate cancer cell invasion, tumor growth, and metastasis. ONCOGENE, 41, 2833-2845
Yang, C.L., Huang, Y.T., Schmidt, W., Klein, P., Chan, M.T. and Pan, I. (2022) Ethylene Response Factor109 Attunes Immunity, Photosynthesis, and Iron Homeostasis in Arabidopsis Leaves.. Frontiers in Plant Science, 13, 492
Su-Chiung Fang*, Jhun-Chen Chen, Pou-Yi Chang, Hsiang-Yin Lin (2022) Co-option of the SHOOT MERISTEMLESS network regulates protocorm-like-body development in Phalaenopsis aphrodite. Plant Physiology, 190 (1): 127-145.
K.-Y. Chen, P.-T. Yang, H.-F. Chang, K.-C. Yeh, S.-L. Wang* (2022) Soil gallium speciation and resulting gallium uptake by rice plants. Journal of Hazardous Materials, 424, 127582
Chen C-C, Li M-S, Chen K-T, Lin Y-H, Ko S-S* (2022) Photosynthetic and Morphological Responses of Sacha Inchi (Plukenetia volubilis L.) to Waterlogging Stress. Plants, 11(3), 249
Beatriz Val-Torregrosa,Mireia Bundó,Héctor Martín-Cardoso,Marcel Bach-Pages,Tzyy-Jen Chiou,Victor Flors,Blanca San Segundo* (2022) Phosphate-induced resistance to pathogen infection in Arabidopsis. Plant Journal, 110(2), 452-469
Ke CH, Tomiyasu H, (Lin YL), Huang WH, Chiang HC, Lin CS (2022) Canine transmissible venereal tumor established in immunodeficient mice reprograms the gene expression profiles associated with a favorable tumor microenvironment to enable cancer malignancy.. BMC VETERINARY RESEARCH, 18(1), 4
Yen-Ning Chen, Heather N. Cartwright, and Cheng-Hsun Ho* (2022) In vivo visualization of nitrate dynamics using a genetically encoded fluorescent biosensor. SCIENCE ADVANCES, 8(42), eabq4915.
Cheng, S.-C.*; Lin, H.-J.; Lee, C.-Y.; Huang, M.-Z.; Shiea, J.* (2022) Gas chromatography combined with flame-induced atmospheric pressure chemical ionization mass spectrometry for the analysis of fatty acid methyl esters and saturated hydrocarbons. Anal. Chim, 1200, 339611
Shiea, J.*; Lin, H.-J.; Bhat, S. M.; Lee, C.-Y.; Huang, M.-Z.; Ponnusamy, V. K.; Cheng, S.-C.* (2022) Thin layer chromatography/desorption flame-induced atmospheric pressure chemical ionization/mass spectrometry for the analysis of volatile and semi-volatile mixtures. Rapid Commun. Mass Spectrom, 36, e9409
Wei Wen-Chi, Shyur Lie-Fen, Yang Ning-Sun (2022) Cellular and Molecular Signaling as Targets for Cancer Vaccine Therapeutics. Cells, 11(9), 1590
Hu Hao-Chun, Yu Szu-Yin, Hung Xiao-Shan, Su Chun-Han, (Yang Yu-Liang), Wei Chien-Kei, Cheng Yuan-Bin, Wu Yang-Chang, Yen Chia-Hung, Hwang Tsong-Long, Chen Shu-Li, Szatmári István, Hunyadi Attila, Tsai Yi-Hong, Chang Fang-Rong* (2022) Composition decipherment of Ficus pumila var. awkeotsang and its potential on COVID-19 symptom amelioration and in silico prediction of SARS-CoV-2 interference.. Journal of Food and Drug Analysis, 30(3), 440-453
Su Chun-Han, Cheng Yu-Chieh, Lai Kuei-Hung, Chang Yu-Chia, Sun Chi-Hui, Tu Po-Wen, Lin Ching-Chih, Hwang Tsong-Long, (Yang Yu-Liang*) (2022) Exploring the relationship between metabolite composition and the cold/hot properties ascribed in traditional Chinese medicine by mass spectral molecular networking–a pilot study. Journal of Food and Drug Analysis, 30(3), 402-416
Toopaang W, Bunnak W, Srisuksam C, Wattananukit W, Tanticharoen M, (Yang YL*), Amnuaykanjanasin A* (2022) Microbial polyketides and their roles in insect virulence: from genomics to biological functions.. Natural product reports, 39(11), 2008-2029
Cheng Yu-Ting, Nakagawa-Goto Kyoko, Lee Kuo-Hsiung, Shyur Lie-Fen (2022) MicroRNA-Mediated Mitochondrial Dysfunction Is Involved in the Anti-triple-Negative Breast Cancer Cell Activity of Phytosesquiterpene Lactones. ANTIOXIDANTS & REDOX SIGNALING, 0, 1-17
Chang Meng-Ting, Tsai Li-Chu, Nakagawa-Goto Kyoko, Lee Kuo-Hsiung, Shyur Lie-Fen* (2022) Phyto-sesquiterpene lactones DET and DETD-35 induce ferroptosis in vemurafenib sensitive and resistant melanoma via GPX4 inhibition and metabolic reprogramming. Pharmacological Research, 178, 106148
Su CH, Wang BW, Dutkiewicz EP, Hsu CC, (Yang YL*) (2022) Surface-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry (SALDI-IMS)-Based Detection of Vinca Alkaloids Distribution in the Petal of Madagascar Periwinkle.. Methods in molecular biology (Clifton, N.J.), 2505, 45-58
Feng RY, Chen YH, Lin C, Tsai CH, (Yang YL), Chen YL* (2022) Surfactin secreted by Bacillus amyloliquefaciens Ba01 is required to combat Streptomyces scabies causing potato common scab.. Frontiers in plant science, 13, 998707
Li YH, Chang ZT, Yen MR, Huang YF, Chen TH, Chang JC, Wu MC, (Yang YL), Chen YW, Nai YS* (2022) Transcriptome of Nosema ceranae and Upregulated Microsporidia Genes during Its Infection of Western Honey Bee (Apis mellifera).. Insects, 13(8), 716
Su CH, Cheng YC, Chang YC, Kung TH, Chen YL, Lai KH, Hsieh HL, Chen CY, Hwang TL, (Yang YL*) (2022) Untargeted LC-MS/MS-Based Multi-Informative Molecular Networking for Targeting the Antiproliferative Ingredients in Tetradium ruticarpum Fruit.. MOLECULES, 27(14), 4462
Barchenger Derek W., Hsu Yu-ming, Ou Jheng-yang, Lin Ya-ping, (Lin Yao-cheng), Balendres Mark Angelo O., Hsu Yun-che, Schafleitner Roland, Hanson Peter (2022) Whole genome resequencing and complementation tests reveal candidate loci contributing to bacterial wilt (Ralstonia sp.) resistance in tomato. Scientific Reports, 12(1), 8374
Tu Yi-Lin, Lin Wei-Yang, (Lin Yao-Cheng) (2022) Toward automatic plant phenotyping: starting from leaf counting. Multimedia Tools and Applications, 81(9), 11865-11879
Tu Po-Wen, Chiu Jie-Siang, Lin Chih, Chien Chih-Cheng, Hsieh Feng-Chia, Shih Ming-Che, Yang Yu-Liang (2022) Evaluation of the Antifungal Activities of Photorhabdus akhurstii and Its Secondary Metabolites against Phytopathogenic Colletotrichum gloeosporioides. Journal of Fungi, 8(4), 403
Lin Choun-Sea, Hsu Chen-Tran, Yuan Yu-Hsuan, Zheng Po-Xing, Wu Fu-Hui, Cheng Qiao-Wei, Wu Yu-Lin, Wu Ting-Li, Lin Steven, Yue Jin-Jun, Cheng Ying-Huey, Lin Shu-I, Shih Ming-Che, Sheen Jen, (Lin Yao-Cheng)* (2022) DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato Solanum peruvianum using protoplast regeneration. Plant Physiology, 188(4), 1917-1930
Yang C, Han N, Inoue C, (Yang YL), Nojiri H, Ho YN, Chien MF* (2022) Rhizospheric plant-microbe synergistic interactions achieve efficient arsenic phytoextraction by Pteris vittata.. Journal of hazardous materials, 434, 128870
Lin CC, Hoo SY, Ma LT, Lin C, Huang KF, Ho YN, Sun CH, Lee HJ, Chen PY, Shu LJ, Wang BW, Hsu WC, Ko TP, (Yang YL)* (2022) Integrated omics approach to unveil antifungal bacterial polyynes as acetyl-CoA acetyltransferase inhibitors.. Communications biology, 5(1), 454
Tu PW, Chiu JS, Lin C, Chien CC, Hsieh FC, Shih MC, (Yang YL)* (2022) Evaluation of the Antifungal Activities of Photorhabdus akhurstii and Its Secondary Metabolites against Phytopathogenic Colletotrichum gloeosporioides.. Journal of fungi (Basel, Switzerland), 8(4), 403
Wu FH, Yuan YH, Hsu CT, Cheng QW, Lin CS (2022) Application of Protoplast Regeneration to CRISPR/Cas9 Mutagenesis in Nicotiana tabacum.. Methods in molecular biology (Clifton, N.J.), 2464, 49-64
Hsieh, D.-K., Chuang, S.-C., Chen, C.-Y., Chao, Y.-T., Lu, M.-Y. *Lee, M.-H., *Shih, M.-C. (2022) Comparative genomics of three Colletotrichum scovillei strains and genetic analysis revealed genes involved in fungal growth and virulence on chili pepper. Frontiers in Microbiology,
Ching-Wen Chiu, Ya-Ru Li, Cheng-Yuan Lin, Hsin-Hung Yeh and Ming-Jung Liu* (2022) Translation initiation landscape profiling reveals hidden open reading frames required for the pathogenesis of tomato yellow leaf curl Thailand virus. Plant Cell,
Hsu, C.-T., Yuan, Y.-H., Zheng, P.-X. Wu, F.-H., Cheng, Q.-W., Wu, Y.-L., Lin, S., Yue, J.-J., Cheng, Y.-H., Lin, S.-I., Shih*, M.-C., Sheen*, J., Lin1*,+, Y.-C. and Lin*,+, C.-S. (2022) DNA-free CRISPR-Cas9 gene editing of tetraploid tomatoes using protoplast regeneration. Plant Physiology,
Su-Ying Yeh, Lin Hsin-Hung, Chang Yao-Ming, Chang Yu-Lun, Chang Chao-Kang, Huang Yi-Cin, Ho Yi-Wen, Lin Chu-Yin, Zheng Jun-Ze, Jane Wann-Neng, Ng Chun-Yeung, Lu Mei-Yeh, Lai I-Ling, To Kin-Ying, Li Wen-Hsiung, Ku Maurice S B* (2022) Maize Golden2-like transcription factors boost rice chloroplast development, photosynthesis and grain yield. Plant Physiology, 188(1), 442-459