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Published Papers

Cheng, C.-Y.; Yuan, C.-H.; Cheng, S.-C.; Huang, M.-Z.; Chang, H.-C.; Cheng, T.-L.; Yeh, C.-S.; Shiea, J.* (2008) Electrospray-assisted Laser Desorption/Ionization Mass Spectrometry for Continuously Monitoring the States of Ongoing Chemical Reactions in Organic or Aqueous Solution under Ambient Conditions. Anal. Chem, 80, 7699-7705.
Shiea, J.*; Yuan, C.-H.; Huang, M.-Z.; Cheng, S.-C.; Ma, Y.-L.; Tseng, W.-L.; Chang, H.-C.; Hung, W.-C. (2008) Detection of Native Protein Ions in Aqueous Solution under Ambient Conditions by Electrospray Laser Desorption/Ionization Mass Spectrometry. Anal. Chem, 80, 4845-4852
Yang, W.-C., Chang, S.-L., Chang, L.-T., Chiang, Y.-M., and Shyur, L.-F. (2008) Pure compounds (2-D-glucopyranosyloxy-1-hydroxytrideca-5,7,9,11-triyne and 3-D- glucopyranosyloxy-1-hydroxy-6(E)-tetradecene-8,10,12-triyne) and n-butanol fraction from Bidens pilosa Linn var radiate can prevent Th1-mediated autoimmune disease via suppressing Th1 cell differentiation and/or promoting Th2 cell differentiation. (US and ROC patents pending) (One technology licensing/transfer to local biotech company),
Yang, W.-C., Chang, S.-L., Chiang, Y.-M., and Shyur, L.-F. (2008) Immunomodulatory phytocompounds and the highly efficient platform to screen the same. US patent pending,
Yang FL, Hua KF, Yang YL, Zou W, Chen YP, Liang SM, Hsu HY, Wu SH (2008) TLR-independent induction of human monocyte IL-1 by phosphoglycolipids from thermophilic bacteria. Glycoconjugate Journal, 25(5), 427-439
Yang FL*, Hua KF*, Yang YL, Zou W, Chen YP, Liang SM, Hsu HY*, Wu SH* (2008) TLR-independent induction of human monocyte IL-1 by phosphoglycolipids from thermophilic bacteria. Glycoconjugate Journal, 25, 427-439
Hong, Y.-F, Liu, C.-Y., Cheng, K.-J., Hour, A.-L., Chan, M.-T., Tseng T.-H., Chen, K.-Y., Shaw, J.-F., and Yu, S.-M.* (2008) The sweet potato sporamin promoter confers high-level phytase expression and improves organic phosphorus acquisition and tuber yield of transgenic potato. Plant Molecular Biology, 67, 347–361
Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, Kanno M, Kawahara Y, Kawashima H, Kubooka H, Matsuya A, Nakaoka H, Saichi N, Sanbonmatsu R, Sato Y, Shinso Y, Suzuki M, Takeda J, Tanino M, Todokoro F, Yamaguchi K, Yamamoto N, Yamasaki C, Imanishi T, Okido T, Tada M, Ikeo K, Tateno Y, Gojobori T, Lin YC, Wei FJ, Hsing YI, Zhao Q, Han B, Kramer MR, McCombie RW, Lonsdale D, O'Donovan CC, Whitfield EJ, Apweiler R, Koyanagi KO, Khurana JP, Raghuvanshi S, Singh NK, Tyagi AK, Haberer G, Fujisawa M, Hosokawa S, Ito Y, Ikawa H, Shibata M, Yamamoto M, Bruskiewich RM, Hoen DR, Bureau TE, Namiki N, Ohyanagi H, Sakai Y, Nobushima S, Sakata K, Barrero RA, Sato Y, Souvorov A, Smith-White B, Tatusova T, An S, An G, OOta S, Fuks G, Fuks G, Messing J, Christie KR, Lieberherr D, Kim H, Zuccolo A, Wing RA, Nobuta K, Green PJ, Lu C, Meyers BC, Chaparro C, Piegu B, Panaud O, Echeverria M (2008) The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic acids research, 36(S1), D1028-D1033
Martin F, Aerts A, Ahren D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buee M, Brokstein P, Canback B, Cohen D, Courty PE, Coutinho PM, Delaruelle C, Detter JC, Deveau A, DiFazio S, Duplessis S, Fraissinet-Tachet L, Lucic E, Frey-Klett P, Fourrey C, Feussner I, Gay G, Grimwood J, Hoegger PJ, Jain P, Kilaru S, Labbe J, Lin YC, Legue V, Le Tacon F, Marmeisse R, Melayah D, Montanini B, Muratet M, Nehls U, Niculita-Hirzel H, Oudot-Le Secq MP, Peter M, Quesneville H, Rajashekar B, Reich M, Rouhier N, Schmutz J, Yin T, Chalot M, Henrissat B, Kues U, Lucas S, Van de Peer Y, Podila GK, Polle A, Pukkila PJ, Richardson PM, Rouze P, Sanders IR, Stajich JE, Tunlid A, Tuskan G, Grigoriev IV (2008) The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature, 452(7183), 88-92
Chang YW, Robert Liu FG, Yu N, Sung HM, Yang P, Wang D, Huang CJ, Shih MC, Li WH (2008) Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast. Molecular biology and evolution, 25(9), 1863-1875
S.-I. Lin, S.-F. Chiang, W.-Y. Lin, J.-W. Chen, C.-Y. Tseng, P.-C. Wu, T.-J. Chiou* (2008) Regulatory network of microRNA399 and PHO2 by systemic signaling. Plant Physiology, 147, 732-746
Liu JY, Yang FL, Lu CP, Yang YL, Wen CL, Hua KF, Wu SH (2008) Polysaccharides from Dioscorea batatas induce tumor necrosis factor-alpha secretion via Toll-like receptor 4-mediated protein kinase signaling pathways. Journal of Agricultural and Food Chemistry, 56(21), 9892-9898
Sanjaya, Hsiao, P., Su, R.-C., Ko, S.-S., Tong, C.-G., Yang, R.-Y. and Chan, M.-T.* (2008) Overexpression of Arabidopsis tryptophan synthase beta 1 (AtTSB1) in Arabidopsis and tomato confers tolerance to cadmium stress and protects plants against lipid peroxidation and enhanced nutritional quality. Plant Cell & Environment, 31(8), 1074-1085
Sanjaya, P.Y. Hsiao, R.C. Su, S.S. Ko, C.G. Tong, R.Y. Yang and M. T. Chan* (2008) Overexpression of Arabidopsis tryptophan synthase beta 1 (AtTSB1) in Arabidopsis and tomato confers tolerance to cadmium stress . Plant Cell & Environment, 31(8), 1074-1085
Sanjaya, Chia-Wen Li, and Chan, M.-T.* (2008) Non-antibiotic selection marker genes in plant transformation: present and future prospects. Current Topics in Plant Biology, 9, 69-78
Yang YL, Hua KF, Chuang PH, Wu SH, Wu KY, Chang FR, Wu YC (2008) New cyclic peptides from the seeds of Annona squamosa L and their anti-inflammatory activities. Journal of Agricultural and Food Chemistry, 56(2), 386-392
Chang SH, Lu LS, Wang NN, and Charng YY* (2008) Negative feedback regulation of system-1 ethylene production by the tomato 1-aminocyclopropane-1-carboxylate synthase 6 gene promoter. Plant Science, 175(1-2), 149-160
Tsai, L.-C.*, Huang, H.-C., Hsiao, C.-H., Chiang, Y.-N., Shyur, L.-F.*, Lin, Y.-S., and Lee, S,-H. (2008) Mutational and structural studies of the active-site residues in truncated Fibrobacter succinogenes 1,3–1,4-β-D-glucanase. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, D64, 1259–1266
Liaw CC, Yang YL, Chen M, Chang FR, Chen SL, Wu SH, Wu YC (2008) Mono-tetrahydrofuran annonaceous acetogenins from Annona squamosa as cytotoxic agents and calcium ion chelators. Journal of Natural Products, 71(5), 764-771
Yang, N.-S., Su, P.-F., Li, C.-J., and Shyur, L.-F. (2008) Methods for enhancing proliferation of bone marrow cells or spleen cells with an ethanol-insoluble extract of Dioscorea. (US patent issued No: 7,419,690 B2; ROC patent pending) (One technology licensing/transfer to local biotech company), No, 7,419,690 B2
Shyur, L.-F.* and Yang, N.-S.* (2008) Metabolomics for phytomedicine research and drug development . CURRENT OPINION IN CHEMICAL BIOLOGY, 12, 66-71
Wang AY, Leong S, Liang YC, Huang RC, Chen CS, Yu SM. (2008) Immobilization of growth factors on collagen scaffolds mediated by polyanionic collagen mimetic peptides and its effect on endothelial cell morphogenesis. Biomacromolecules, 9(10), 2929-2936.
Shyur, L.-F.*, Huang, C.-C., Lo, C.-P., Chiu, C.-Y., Chen, Y.-P., Wang, S.-Y., and Chang, S.-T. (2008) Hepatoprotective phytocompounds from Cryptomeria japonica are potent modulators of inflammatory mediators. PHYTOCHEMISTRY, 69, 1348-1358
Wang, C.-Y., Staniforth, V., Chiao, M.-T., Hou, C.-C., Wu, H.-M., Yeh, K.-C., Chen, C.-H., Hwang, P.-I., Wen, T.-N., Shyur, L.-F.* (2008) Genomics and proteomics of immune modulatory effects of a butanol fraction of Echinacea purpurea in human dendritic cells. BMC Genomics, 9, 479-498
Wu, J.-H., Tung, Y.-T., Chien, S.-C., Wang, S.-Y., Kuo, Y.-H., Shyur, L.-F.*, and Chang, S.-T.* (2008) Effect of phytocompounds from the heartwood of Acacia confusa on inflammatory mediator production. Journal of Agricultural and Food Chemistry, 56, 1567-1573
Chuang PH, Hsieh PW, Yang YL, Hua KF, Chang FR, Shiea J, Wu SH, Wu YC (2008) Cyclopeptides with anti-inflammatory activity from seeds of Annona montana. Journal of Natural Products, 71(8), 1365-1370
Jang S, Marchal V, Panigrahi KC, Wenkel S, Soppe W, Deng XW, Valverde F, Coupland G (2008) Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response. The EMBO Journal, 27(8), 1277-1288
Lee CD, Sun HC, Hu SM, Chiu CF, Homhuan A, Liang SM, Leng CH* and Wang TF* (2008) An improved SUMO fusion protein system for effective production of native proteins. PROTEIN SCIENCE, 17, 1241–1248
Lin, F.-M., Tsai, C.-H., Yang, Y.-C., Tu, W.-C., Chen, L.-R., Liang, Y.-S., Wang, S.-Y., Shyur, L.-F., Chien, S.-C., Cha, T.-L., Hsiao, P.-W. (2008) A novel diterpene suppresses CWR22Rv1 tumor growth in vivo through antiproliferation and proapoptosis. Cancer Research, 68, 6634-6642
Schlueter JA, Goicoechea JL, Collura K, Gill N, Lin JY, Yu Y, Kudrna D, Zuccolo A, Vallejos CE, Munoz-Torres M, Blair MW, Tohme J, Tomkins J, McClean P, Wing RA, and Jackson SA* (2008) BAC-end sequence analysis and a draft physical map of the common bean (Phaseolus vulgaris L.) genome. Tropical Plant Biology, 1, 40-48
Shyur LF*, Yang NS* (2008) Metabolomics for phytomedicine research and drug development. Current Opinion in Chemical Biology, 12(1), 66-71
Lee CY Ser HF, Chen HW, Lin CS, Chu TM, Yang PC, Tsay HS, Chen JJW* (2008) The anticancer effects of tanshinone I in human non-small-cell lung cancer. MOLECULAR CANCER THERAPEUTICS, 7(11), 3527-3538
Lin CS, Liu NT, Liao DC, Yu JS, Tsao CH, Lin CH, Sun CW, Jane WN, Tsay HS, Chen JJW, Lai EM, Lin NS, Chang WC, Lin CC* (2008) Differential protein expression of two photosystem II subunits, PsbO and PsbP in an albino mutant of Bambusa edulis Murno with chloroplast DNA aberration . JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE, 133, 270-277
Su-Chiung Fang and James G. Umen (2008) A Suppressor Screen in Chlamydomonas Identifies Novel Components of the Retinoblastoma Tumor Suppressor Pathway. GENETICS, 178: 1295–1310
Sanjaya, P.Y. Hsiao, R.C. Su, S.S. Ko, "C.G. Tong", R.Y. Yang, M.T. Chan* (2008) Overexpression of Arabidopsis thaliana tryptophan synthase beta 1 (AtTSB1) in Arabidopsis and tomato confers tolerance to cadmium stress. Plant Cell & Environment, 31(8), 1074-1085
Feng-Min Lin, Chin-Hsien Tsai, Yu-Chih Yang, Wei-Chun Tu, Li-Ru Chen, Yun-Sa Liang,Sheng-Yang Wang, Lie-Fen Shyur, Shih-Chang Chien, Tai-Lung Cha, Pei-Wen Hsiao* (2008) A novel diterpene suppresses CWR22Rv1 tumor growth in vivo through anti-proliferation and pro-apoptosis. Cancer Research, 68(16), 6634-6642
Lin SH, Kuo HF, Canivenc G, Lin CS, Lepetit M, Hsu PK, Tillard P, Lin HL, Wang YY, Tsai CB, Gojon A, Tsay YF* (2008) Mutation of the AtNRT1.5 nitrate transporter gene causes defective root-to-shoot nitrate transport. Plant Cell, 20(9), 2514-2528
Shu-I Lin, Tzyy-Jen Chiou* (2008) Long-distance Movement and Differential Targeting of MicroRNA399s. Plant Signaling & Behavior., 3(9), 722-724
Yun-Ju Chen, Ming-Ting Lee, Hsiao-Chun Yao, Pei-Wen Hsiao, Ferng-Chun Ke*, Jiuan-Jiuan Hwang* (2008) Crucial Role of Estrogen Receptor-α Interaction with Transcription Coregulators in Follicle-StimulatingHormone and Transforming Growth Factor β1 Up-Regulation of Steroidogenesis in Rat Ovarian Granulosa Cells. ENDOCRINOLOGY, 149(8), 4658-4668
Wang CY, Staniforth V, Chiao MT, "Hou CC", Wu HM, Yeh KC, Chen CH, Hwang PI, Wen TN, Shyur LF, Yang NS (2008) Genomics and proteomics of immune modulatory effects of a butanol fraction of echinacea purpurea in human dendritic cells. BMC Genomics, 9, 479
Wang CY, Staniforth V, Chiao MT, Hou CC, Wu HM, Yeh KC, Chen CH, Hwang PI, Wen TN, Shyur LF, Yang NS* (2008) Genomics and proteomics of immune modulatory effects of a butanol fraction of echinacea purpurea in human dendritic cells. BMC Genomics, 9, 479.
C.-Y. Wang, V. Staniforth, M.-T. Chiao, C.-C. Hou, H.-M. Wu, K.-C. Yeh, C.-H. Chen, P.-I. Hwang, T.-N. Wen, L.-F. Shyur* and N.-S. Yang* (2008) Genomics and proteomics of immune modulatory effects of a butanol fraction of echinacea purpurea in human dendritic cells. BMC Genomics, 9, 479-498
Liu NT, Wu FH, Tsay HS, Chang WC, and Lin CS* (2008) Establishment of a cDNA library from Bambusa edulis in vitro-grown shoot. PLANT CELL TISSUE AND ORGAN CULTURE, 95(1), 21-27
Su PF, Staniforth V, Li CJ, Wang CY, Chiao MT, Wang SY, Shyur LF, Yang NS* (2008) Immunomodulatory effects of phytocompounds characterized by in vivo transgenic human GM-CSF promoter activity in skin tissues. Journal of Biomedical Science, 15(6), 813-822
Su, P.-F., Staniforth, V., Li, Ch.-J., Wang, C.-Y., Chiao, M.-T., Wang, S.-Y., Shyur, L.-F., and Yang, N.-S. (2008) Immunomodulatory effects of phytocompounds characterized by in vivo transgenic human GM-CSF promoter activity in skin tissues. Journal of Biomedical Science, 15(6), 813-22
Tsai, L.-C.*, Chen, Y.-N. and Shyur, L.-F. (2008) Structural modeling of glucanasesubstrate complexes reveals residue Tyr177 in barley 1,3-1,4-beta-D-glucanase plays an important role in carbohydrate recognition . Journal of Computer-Aided Molecular Design, 22(12), 915-923
Lee, L.Y., Fang, M.J., Kuang, L.Y., and Gelvin, S.B. (2008) Vectors for multi-color bimolecular fluorescence complementation to investigate protein-protein interactions in living plant cells. Plant Methods, 4