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Published Papers (2023-01)
Sugars and sucrose transporters in pollinia of Phalaenopsis aphrodite (Orchidaceae)
Journal of Experimental Botany
Published Papers (2023-06)
Hypoxia response protein HRM1 modulates the activity of mitochondrial electron transport chain in Arabidopsis under hypoxic stress
New Phytologist
Published Papers (2022)
Evaluation of the Antifungal Activities of Photorhabdus akhurstii and Its Secondary Metabolites against Phytopathogenic Colletotrichum gloeosporioides
Journal of Fungi
News 2022-07-7
Congratulations to Dr. Ming-Che Shih for being elected as Academician of Academia Sinica!

Research (2022)
New insight into how Ethylene modulates translation dynamics in Arabidopsis under submergence via GCN2 and EIN2
Science Advance, Vol 8, Issue 22

Research (2022)
Breakthrough of wild tomato protoplast regeneration and DNA-free CRISPR-Cas9 genome editing.
Plant Physiology, Volume 188, Issue 4, April 2022, Pages 1917–1930

Published Papers (2019)
Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence
Proceedings of the National Academy of Sciences of the United States of America
Published Papers (2019)
The SnRK1-eIFiso4G1 signaling relay regulates the translation of specific mRNAs in Arabidopsis under submergence
The New phytologist
Published Papers (2019)
Environmental biosafety assessment on transgenic Oncidium orchid modified by RNA interference of Phytoene Synthase genes
Plant Biotechnology
Published Papers (2018)
Chromosome-level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding
Plant Biotechnology Journal
Published Papers (2018)
Application of protoplast technology to CRISPR/Cas9 mutagenesis: from single-cell mutation detection to mutant plant regeneration
Plant Biotechnology Journal
Published Papers (2017)
Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids
The Plant journal : for cell and molecular biology
Published Papers (2017)
Orchidstra 2.0-A Transcriptomics Resource for the Orchid Family
Plant & Cell Physiology
Published Papers (2017)
Community recommendations on terminology and procedures used in flooding and low oxygen stress research
The New phytologist
Published Papers (2016)
Transcriptome-wide analysis of the MADS-box gene family in the orchid Erycina pusilla
Plant Biotechnology Journal
Published Papers (2016)
Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence
Journal of Experimental Botany
Published Papers (2016)
Involvement of type VI secretion system in secretion of iron chelator pyoverdine in Pseudomonas taiwanensis
Scientific reports
Published Papers (2016)
Ethylene-Regulated Glutamate Dehydrogenase Fine-Tunes Metabolism during Anoxia-Reoxygenation
Plant Physiology
Published Papers (2015)
The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family
Scientific reports
Published Papers (2015)
NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss
BMC Plant Biology
Published Papers (2015)
Integrating an algal beta-carotene hydroxylase gene into a designed carotenoid-biosynthesis pathway increases carotenoid production in yeast
Bioresource Technology
Published Papers (2014)
BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development
BMC Plant Biology
Published Papers (2014)
Ethylene plays an essential role in the recovery of Arabidopsis during post-anaerobiosis reoxygenation
Plant Cell & Environment
Published Papers (2014)
Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite
Plant Molecular Biology
Published Papers (2014)
Characterization of an Insecticidal Toxin and Pathogenicity of Pseudomonas taiwanensis against Insects
PLoS pathogens
Published Papers (2013)
Systematic screening of glycosylation- and trafficking-associated gene knockouts in Saccharomyces cerevisiae identifies mutants with improved heterologous exocellulase activity and host secretion
BMC Biotechnology
Published Papers (2013)
Plant defense after flooding
Plant Signaling & Behavior
Published Papers (2013)
Catalog of Erycina pusilla miRNA and categorization of reproductive phase-related miRNAs and their target gene families
Plant Molecular Biology
Published Papers (2013)
Assembling a cellulase cocktail and a cellodextrin transporter into a yeast host for CBP ethanol production
Biotechnology for biofuels
Published Papers (2013)
Orchidstra: an integrated Orchid functional genomics database"
Plant Cell and Physiology
Published Papers (2013)
Global transcriptome analysis and identification of a CONSTANS-like gene family in the orchid Erycina pusilla
Planta
Published Papers (2013)
Submergence confers immunity mediated by the WRKY22 transcription factor in Arabidopsis
Plant Cell
Published Papers (2013)
A Modified ABCDE Model of Flowering in Orchids Based on Gene Expression Profiling Studies of the Moth Orchid Phalaenopsis aphrodite
PloS one
Published Papers (2012)
Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding
PLoS One
Published Papers (2012)
A highly efficient β-glucosidase from a buffalo rumen fungus Neocallimastix patriciarum W5 Biotechnol for Biofuel
Biotechnology for Biofuels
Published Papers (2012)
PGASO: A synthetic biology tool for engineering a cellulolytic yeast
Biotechnology for Biofuels
Published Papers (2012)
Development of cellulosic ethanol production process vis co-culturing of artificial cellulosomal Bacillus and kefir yeast
Applied Energy
Published Papers (2011)
The AP2/ERF transcription factor HIF1 modulates ethylene responses during hypoxia in Arabidopsis
Plant Physiology
Published Papers (2011)
Omics approach accelerates gene hunting from novel microbes: Functional characterization of cellulases identified from Neocallimastix patriciarum w5 by transcriptome and secretome
Biotechnology for Biofuels
Published Papers (2011)
Mixed culture fermentation from lignocellulosic materials using thermophilic lignocellulose-degrading anaerobes
PROCESS BIOCHEMISTRY
Published Papers (2011)
Insights into hypoxic systemic responses based on analyses of transcriptional regulation in Arabidopsis
PloS one
Published Papers (2011)
Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses
Biotechnology for biofuels
Published Papers (2011)
De novo Assembly of Expressed Transcripts and Global Analysis of Phalaenopsis aphrodite Transcriptome
Plant & Cell Physiology
Published Papers (2009)
Roles of trans and cis variation in yeast intraspecies evolution of gene expression
Molecular biology and evolution
Published Papers (2008)
Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast
Molecular biology and evolution
Published Papers (2007)
Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35
Phytochemistry
Published Papers (2007)
Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors
Genome Research
Published Papers (2006)
Arabidopsis thaliana beta-Glucosidases BGLU45 and BGLU46 hydrolyse monolignol glucosides
Phytochemistry
Published Papers (2006)
An extracellular exo-beta-(1,3)-glucanase from Pichia pastoris: purification, characterization, molecular cloning, and functional expression
Protein expression and purification
Published Papers (2005)
Transcription factor families have much higher expansion rates in plants than in animals
Plant Physiology
Published Papers (2005)
The GUS reporter-aided analysis of the promoter activities of Arabidopsis ACC synthase genes AtACS4, AtACS5, and AtACS7 induced by hormones and stresses
Journal of Experimental Botany
Published Papers (2005)
Gene expression and microscopic analysis of Arabidopsis exposed to chloroacetanilide herbicides and explosive compounds A phytoremediation approach
Plant Physiology
Published Papers (2005)
Differential expression of genes encoding 1-aminocyclopropane-1-carboxylate synthase in Arabidopsis during hypoxia
Plant Molecular Biology
Published Papers (2004)
[Promoter specificity of LE-ACS6 gene in LE-ACS6::GUS transgenic arabidopsis plants]
Zhi wu sheng li yu fen zi sheng wu xue xue bao = Journal of plant physiology and molecular biology
Published Papers (2004)
Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 1
Plant Molecular Biology
Published Papers (2003)
Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis
Biochemical and biophysical research communications
Published Papers (2002)
Mutations affecting light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis
Plant Physiology
Published Papers (2002)
Involvement of calcium in the anoxic signaling pathways of Arabidopsis thaliana
Journal of Plant Physiology and Molecular Biology
Published Papers (2002)
Arabidopsis 2010: Collaborative Project on the Functional Genomics of the Arabidopsis -Glucosidase and -Galactosidase Gene Families
Plant Physiol
Published Papers (2001)
Signaling events in the hypoxic induction of alcohol dehydrogenase gene in Arabidopsis
Plant Physiology
Published Papers (2001)
Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana
Plant Molecular Biology
Published Papers (1999)
Mutations affecting induction of glycolytic and fermentative genes during germination and environmental stresses in Arabidopsis
Plant physiology
Published Papers (2022)
Comparative genomics of three Colletotrichum scovillei strains and genetic analysis revealed genes involved in fungal growth and virulence on chili pepper
Frontiers in Microbiology
Published Papers (2022)
DNA-free CRISPR-Cas9 gene editing of tetraploid tomatoes using protoplast regeneration
Plant Physiology
Published Papers (2021)
Efficient and Economical Targeted Insertion in Plant Genomes via Protoplast Regeneration
The CRISPR journal
Published Papers (2021)
Energy and sugar signaling during hypoxia
The New phytologist
Published Papers (2021)
CaNRT2.1 is required for nitrate but not nitrite uptake in chili pepper pathogen Colletotrichum acutatum.
Frontiers in Microbiology
Published Papers (2020)
Blue Light Acclimation Reduces the Photoinhibition of Phalaenopsis aphrodite (Moth Orchid)
International Journal of Molecular Sciences
Published Papers (2020)
Blue Light Mediates Chloroplast Avoidance and Enhances Photoprotection of Vanilla Orchid
International Journal of Molecular Sciences
Published Papers (2020)
Whole Genome Sequencing and Tn5-Insertion Mutagenesis of Pseudomonas taiwanensis CMS to Probe Its Antagonistic Activity Against Rice Bacterial Blight Disease
International Journal of Molecular Sciences
Published Papers (2019)
Segmental and tandem chromosome duplications led to divergent evolution of the chalcone synthase gene family in Phalaenopsis orchids
Annals of botany
Research Findings (2019)
SnRK1-eIFiso4G1 signaling relay regulates the translation of specific mRNAs in Arabidopsis under submergence
Research Findings (2019)
A Regulatory Cascade Involving Transcriptional and N-end Rule Pathways in Rice under Submergence
Research Findings (2018)
Chromosome-level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding
Research Findings (2017)
Application of protoplast technology to CRISPR/Cas9 mutagenesis: From single cell mutation detection to mutant plant regeneration
Research Findings (2017)
Orchidstra 2.0 - A Transcriptomics Resource for the Orchid Family
Research Findings (2014)
Characterization of an Insecticidal Toxin and Pathogenicity of Pseudomonas taiwanensis against Insects
Research Findings (2013)
Submergence confers immunity mediated by the WRKY22 transcription factor in Arabidopsis
Research Findings (2011)
Transcriptional regulation during hypoxia stress in Arabidopsis
Research Findings (2011)
Construction of Transcriptomic Database of Phalaenopsis and Gene Expression Profiling Studies
Sitemap Ming-Che Shih
Ming-Che Shih website
News (1)
Research (2)
Published Papers (68)
Research Findings (9)
Faculty
Kuo-Chen Yeh Yu-Liang Yang Hsin-Hung Yeh Lie-Fen Shyur Tzyy-Jen Chiou Yee-yung Charng Wen-Chin Yang Pei-Wen Hsiao Ming-Tsair Chan Su-Chiung Fang Yet-Ran Chen Ho-Ming Chen Ming-Jung Liu Der-Fen Suen Cheng-Hsun Ho Yao-Cheng Lin Masashi Yamada Yu-Ling Lin Jer-Young Lin Tai-Na Wu Hui-Ming Chen Yun-Chu Chen Choun-Sea Lin Swee-Suak Ko Yu-Chuan Liang Chii-Gong Tong Lin-Yun Kuang Sychyi Cheng
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