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Published Papers

Huang, M.-Z.; Cheng, S.-C.; Jhang, S.-S.; Chou, C.-C.; Cheng, C.-N.; Shiea, J.*; Popov, I.A.; Nikolaev, E.N. (2012) Ambient Molecular Imaging of Dry Fungus Surface by Electrospray Laser Desorption Ionization Mass Spectrometry. Int. J. Mass Spectrom, 325, 172-182
Cheng, S.-C.; Huang, M.-Z.; Wu, L.-C.; Chou, C.-C.; Cheng, C.-N.; Jhang, S.-S.; Shiea, J.* (2012) Building Blocks for the Development of an Interface for High-Throughput Thin Layer Chromatography/Ambient Mass Spectrometric Analysis: A Green Methodology. Anal. Chem, 84, 5864-5868
Lee, W.-L., Shiau, J.-Y., and Shyur, L.-F.* (2012) Taxol, camptothecin and beyond for cancer therapy . Advances in Botanical Research, 62, 133-178
Chen, Po Ting; Chiang, Chung-Jen; Chen, Yu-Ting; Lin, Hsien-Chung; Liu, Hsien-Chung; Chao, Yun-Peng; Shaw, Jei-Fu (2012) Strategy for Stable and High-Level Expression of Recombinant Trehalose Synthase in Escherichia coli. Journal of Agricultural and Food Chemistry, 60(23), 6063-6068
Ho, B.-Y., Lin, C.-H., Apaya, M. K., Chao, W.-W., and Shyur, L.-F.* (2012) Silibinin and Paclitaxel Cotreatment Significantly Suppress the Activity and Lung Metastasis of Triple Negative 4T1 Mammary Tumor Cell in Mice. Journal of Traditional and Complementary Medicine, 2(4), 301-311
Chen HM, Wang PH, Chen SS, Wen CC, Chen YH, Yang WC, Yang NS (2012) Shikonin induces immunogenic cell death in tumor cells and enhances dendritic cell-based cancer vaccine. Cancer Immunology Immunotherapy, 61(11), 1989-2002
Chen Hui-Ming, Wang Pi-Hsueh, Chen Swey-Shen, Wen Chih-Chun, Chen Yun-Hsiang, Yang Wen-Chin, Yang Ning-Sun (2012) Shikonin induces immunogenic cell death in tumor cells and enhances dendritic cell-based cancer vaccine. Cancer Immunology Immunotherapy, 61(11), 1989-2002
Chen HM, Wang PH, Aravindaram K, Chen YH, Yu HH, Yang WC, Yang NS (2012) Shikonin enhances efficacy of a gene-based cancer vaccine via induction of RANTES. Journal of Biomedical Science, 19(1), 42
Chen Hui-Ming, Wang Pi-Hsueh, Aravindaram Kandan, Chen Yun-Hsiang, Yu Hsiu-Hui, Yang Wen-Chin, Yang Ning-Sun (2012) Shikonin enhances efficacy of a gene-based cancer vaccine via induction of RANTES. Journal of Biomedical Science, 19(1), 42
Hung, S.-W., Chiu, C.-F., Chen, T.-A., Chu, C.-L., Huang, C.-C., Shyur, L.-F., Liang, C.-M., and Liang, S.-M (2012) Recombinant viral protein VP1 suppresses HER-2 expression and migration/metastasis of breast cancer. Breast Cancer Research and Treatment, 136, 89-105
Tsai CC, Yang FL, Huang ZY, Chen CS, Yang YL, Hua KF, Li J, Chen ST, Wu SH* (2012) Oligosaccharide and peptidoglycan of Ganoderma lucidum activate the immune response in human mononuclear cells. Journal of Agricultural and Food Chemistry, 60(11), 2830-2837
Gonzalez DJ, Xu Y, Yang YL, Esquenazi E, Liu WT, Edlund A, Duong T, Du L, Molnar I, Gerwick WH, Jensen PR, Fischbach M, Liaw CC, Straight P, Nizet V, Dorrestein PC* (2012) Observing the invisible through imaging mass spectrometry, a window into the metabolic exchange patterns of microbes. Journal of proteomics, 75, 5069-5076
Chepyshko H, Lai CP, Liu JH, Shaw JF (2012) Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L japonica) genome: new insights from bioinformatics analysis. BMC Genomics, 13, 309
Lai CP, Shaw JF. (2012) Interaction analyses of Arabidopsis tubby-like proteins with ASK proteins. Botanical Studies, 53(4), 447-458
Olson A, Aerts A, Asiegbu F, Belbahri L, Bouzid O, Broberg A, Canback B, Coutinho PM, Cullen D, Dalman K, Deflorio G, van Diepen LT, Dunand C, Duplessis S, Durling M, Gonthier P, Grimwood J, Fossdal CG, Hansson D, Henrissat B, Hietala A, Himmelstrand K, Hoffmeister D, Hogberg N, James TY, Karlsson M, Kohler A, Kues U, Lee YH, Lin YC, Lind M, Lindquist E, Lombard V, Lucas S, Lunden K, Morin E, Murat C, Park J, Raffaello T, Rouze P, Salamov A, Schmutz J, Solheim H, Stahlberg J, Velez H, de Vries RP, Wiebenga A, Woodward S, Yakovlev I, Garbelotto M, Martin F, Grigoriev IV, Stenlid J (2012) Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. The New phytologist, 194(4), 1001-1013
Whitford R, Fernandez A, Tejos R, Perez AC, Kleine-Vehn J, Vanneste S, Drozdzecki A, Leitner J, Abas L, Aerts M, Hoogewijs K, Baster P, De Groodt R, Lin YC, Storme V, Van de Peer Y, Beeckman T, Madder A, Devreese B, Luschnig C, Friml J, Hilson P (2012) GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses. Developmental cell, 22(3), 678-685
Liu HY, Chung CY, Yang WC, Liang CL, Wang CY, Chang CY, Chang CL (2012) Exendin-4 improves resistance to Listeria monocytogenes infection in diabetic db/db mice. Journal of veterinary science, 13(3), 245-252
Liu, W.-C., Lin, Y.-S., Jeng, W.-Y., Chen, J.-H., Wang, A. H.-J., and Shyur, L.-F.* (2012) Engineering of dual functional hybrid glucanases. Protein Engineering Design & Selection, 25(11), 771-780
Lee, W.-L. and Shyur, L.-F.* (2012) Deoxyelephantopin impedes mammary adenocarcinoma cell motility through inhibiting calpain-mediated adhesion dynamics and inducing ROS and aggresome formation . Free Radical Biology & Medicine, 52, 1423-1436
Yang CW, Chang CL, Lee HC, Chi CW, Pan JP, Yang WC (2012) Curcumin induces the apoptosis of human monocytic leukemia THP-1 cells via the activation of JNK/ERK Pathways. BMC complementary and alternative medicine, 12, 22
Shen MY, Lin YP, Yang BC, Jang YS, Chiang CK, Mettling C, Chen ZW, Sheu JR, Chang CL, Lin YL, Yang WC (2012) Catenarin Prevents Type 1 Diabetes in Nonobese Diabetic Mice via Inhibition of Leukocyte Migration Involving the MEK6/p38 and MEK7/JNK Pathways. Evidence-Based Complementary and Alternative Medicine, 2012, 982396
Shen, M.Y., Lin, Y.P., Yang, B.C., Jang, Y.S., Chiang, C.K., Mettling, C., Chen, Z.W., Sheu, J.R., Chang, C.T.L.*, Lin, Y.L. *, and Yang, W.C.* (2012) Catenarin prevents type 1 diabetes in non-obese diabetic mice via inhibition of leukocyte migration involving the MEK6/p38 and MEK7/JNK pathways. Evidence-Based Complementary and Alternative Medicine, 982396
Chen, S.-C., Wu, P.-H., Su, Y.-C., Wen, T.-N., Wei, Y.-S., Wang, N.-C., Hsu, N.-C., Wang, Andrew H.-J., and Shyur, L.-F.* (2012) Biochemical characterization of a novel laccase from the basidiomycete fungus Cerrena sp. WR1. Protein Engineering Design & Selection, 25(11), 761-769
Liao WY, Shen CN, Lin LH, Yang YL, Han HY, Chen JW, Kuo SC, Wu SH, Liaw CC* (2012) Asperjinone, a Nor-Neolignan, and Terrein, a Suppressor of ABCG2-Expressing Breast Cancer Cells, from Thermophilic Aspergillus terreus. Journal of Natural Products, 75(4), 630-635
Chia-Yun Ko, Yi-Ling Lai, Wen-Yu Liu, Chia-Hui Lin, Yu-Ting Chen, Long-Fang O. Chen, Tsai-Yun Lin* and Jei-Fu Shaw* (2012) Arabidopsis ENDO2: Its Catalytic Role and Requirement of N-Glycosylation for Function. Journal of Agricultural and Food Chemistry, 60(20), 5169-5179
Wu CY, Yeh YC, Chan JT, Yang YC, Yang JR, Liu MT, Wu HS, Hsiao PW* (2012) A VLP Vaccine Induces broad-spectrum cross-protective antibody immunity against H5N1 and H1N1 subtypes of influenza a virus. PLoS One, 7, e42363
Hacquard S, Joly DL, Lin YC, Tisserant E, Feau N, Delaruelle C, Legue V, Kohler A, Tanguay P, Petre B, Frey P, Van de Peer Y, Rouze P, Martin F, Hamelin RC, Duplessis S (2012) A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust). Molecular plant-microbe interactions : MPMI, 25(3), 279-293
Liu MJ., Wu S, Chen HM, Wu SH.* (2012) Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis. Molecular Systems Biology, 8(566), 1-14
C. J. Chen, W. Y. Chen, M. C. Tseng and Y. R. Chen* (2012) Tunnel Frit: A Nonmetallic In-Capillary Frit for Nanoflow Ultra High-Performance Liquid Chromatography-Mass Spectrometry Applications. ANALYTICAL CHEMISTRY, 84(1), 297-303
Peng JM, Chen YH, Hung SW, Chiu CF, Ho MY, Lee YJ, Lai TC, Hsiao M, Liang CM*, Liang SM* (2012) Recombinant viral protein promotes apoptosis and suppresses invasion of ovarian adenocarcinoma cells by targeting alpha5beta1 integrin to down-regulate Akt and MMP-2. BRITISH JOURNAL OF PHARMACOLOGY, 165(2), 479-493
Hu C, Lin SY, Chi WT, and Charng YY* (2012) Recent gene duplication and subfunctionalization produced a mitochondrial GrpE, the nucleotide exchange factor of Hsp70 complex, specialized in thermotolerance to chronic heat stress in Arabidopsis. Plant Physiology, 158(2), 747-758
Lee YL, Lee LC, Shaw JF * (2012) Multifunctional enzyme thioesterase I/protease I/lysophospholipase L1 of Escherichia coli shows exquisite structure for its substrate preferences. Biocatalysis and Agricultural Biotechnology, 1, 95-104
V. Shanmugam, M. Tsednee and K.-C. Yeh* (2012) ZINC TOLERANCE INDUCED BY IRON 1 reveals the importance of glutathione in the cross homeostasis between zinc and iron in Arabidopsis thaliana. Plant Journal, 69(6), 1006-1017
Shivaprasad PV, Chen HM, Patel K, Bond DM, Santos BA, Baulcombe DC* (2012) A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs. The Plant Cell, 24(3), 859-874
Chen, H.-M., Wang P.-H., Aravindaram K., Chen Y.-H., Yang W.-C., and Yang N.-S.* (2012) Shikonin enhances efficacy of a gene-based cancer vaccine via induction of RANTES. J. Biomed. Sci., 19, 42
I-Chun Pan, I.-C., Liao, D.-C., Wu, F.-H., Daniell, H., Singh, N.D., Chang, C., Ming-Che Shih, M.-C., Chan, M.-T.,* and Lin, C.-S.* (2012) Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding. PLoS One, 7, e34738
Pan, I-C, Liao, D-C., Wu, F-H., Daniell, H., Singh, N.D., Chang, C., Shih, M-C., Chan, M.-T. and Lin, C.-S. (2012) Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding. PLoS One, 7(4), e34738
Pan IC, Liao DC, Wu FH, Daniell H, Singh ND, Chang C, Shih MC, Chan MT*, Lin CS* (2012) Complete Chloroplast Genome Sequence of an Orchid Model Plant Candidate: Erycina pusilla Apply in Tropical Oncidium Breeding. PloS one, 7(4), e34738
Chen, H.-L., Chen, Y.-C., Lu, M.-Y., Chang, J.-J., Wang, H.-T., Ke, H.-M., Wang, T.-Y., Ruan, S.-K., Wang, T.-Y., Hong, K.-Y., Cho, H.-Y., Lin, W.-T., *Shih, M.-C., and *Li, W.-H. (2012) A highly efficient β-glucosidase from a buffalo rumen fungus Neocallimastix patriciarum W5 Biotechnol for Biofuel . Biotechnology for Biofuels, 5, 24
Lee LY, Wu FH, Hsu CT, Shen SC, Yeh HY, Liao DC, Fang MJ, Liu NT, Yen YC, Dokladal L, Sykorova E, Gelvin SB, Lin CS* (2012) Screening a cDNA Library for Protein-Protein Interactions Directly in Planta. The Plant cell, 24(5), 1746-1759
T.-Y. Liu, T.-K. Huang, C.-Y. Tseng, Y.-S. Lai, S.-I. Lin, W.-Y.Lin, J.-W. Chen, T.-J. Chiou* (2012) PHO2-dependent degradation of PHO1 modulates phosphate homeostasis in Arabidopsis. Plant Cell, 24(5), 2168-2183
Staniforth V, Huang WC, Aravindaram K, Yang NS* (2012) Ferulic acid, a phenolic phytochemical, inhibits UVB-induced matrix metalloproteinases in mouse skin vai post-translational mechanisms . Journal of Nutritional Biochemistry, 23(5), 443-451
Hsu, C.-A., Wen, T.-N., Su, Y.-C., Jiang, Z.-B., Chen, C.-W., and Shyur, L.-F.* (2012) Biological degradation of anthroquinone and azo dyes by a novel laccase from Lentinus sp . Environmental Science and Technology, 46, 5109-5117
Liu HC and Charng YY* (2012) Acquired thermotolerance independent of heat shock factor A1 (HsfA1), the master regulator of the heat stress response. Plant Singaling & Behavior, 7(5), 547-550
Cheng YC, Chen TA, Chen CY, Liang CM and Liang SM* (2012) 3′poly-G-Tailed ODNs Inhibit F-spondin to Induce Cell Death and Neurite Retraction in Rat Embryonic Neurons . MOLECULAR NEUROBIOLOGY, 45(3), 536-549
Chen-Kuen Wang, Shin-Yun Hsu, Po-Yen Chen, Kin-Ying To* (2012) Transformation and characterization of transgenic Bidens pilosa L. PLANT CELL TISSUE AND ORGAN CULTURE, 109, 457-464
Chiu CF, Peng JM, Hung SW, Liang CM*, Liang SM*. (2012) Recombinant viral capsid protein VP1 suppresses migration and invasion of human cervical cancer by modulating phosphorylated prohibitin in lipid rafts. CANCER LETTERS, 320(2), 205-214
Yung-Ting Tsai, Po-Yen Chen, Kin-Ying To* (2012) Plant regeneration and stable transformation in the floricultural plant Cleome spinosa, a C3 plant closely related to the C4 plant C gynandra. Plant Cell Reports, 31, 1189-1198
Chang, J.-J., Ho, C-Y., Huang, Ho, F-J, Tsai, T-Y, Ke, H-M, Wang, C. H.-T., Chen, H-L., *Shih, M-C, *Huang, C.-C., *Li, W.-H. (2012) PGASO: A synthetic biology tool for engineering a cellulolytic yeast . Biotechnology for Biofuels, 5, 53
L.-J. Shin, J.-c. Lo and K.-C. Yeh* (2012) Copper chaperone antioxidant protein1 is essential for copper homeostasis. Plant Physiology, 159, 1099-1110
C L T Chang, Yi-Ching Chen, Hui-Ming Chen, Ning-Sun Yang, Wen-Chin Yang (2012) Natural cures for type 1 diabetes: a review of phytochemicals, biological actions, and clinical potential. Curr Med Chem, 20(7), 899-907
Li CW, Lee SH, Chieh PS, Lin CS, Wang YC, Chan MT (2012) Arabidopsis Root-Abundant Cytosolic Methionine Sulfoxide Reductase B Genes MsrB7 and MsrB8 are Involved in Tolerance to Oxidative Stress. Plant & Cell Physiology, 53(10), 1707-1719
Hsu CH, Peng KL, Kang ML, Chen YR, ChuCS, Yang YC, Tsai CH, Jeng YM, Chen YT, Lin FM, Huang HD, Lu YY, Teng Yching, Lin ST, Shen L, Lin RK, Lee SB, Hsu H M, Yu JC*, Hsiao PW* and Juan LJ * (2012) TET1 suppresses cancer invasion by activating the tissue inhibitors of metalloproteinases. Cell Reports, 2(3), 568-579
L.-J. Shin and K.-C. Yeh* (2012) Overexpression of Arabidopsis ATX1 retards plant growth under severe copper deficiency. Plant Signaling & Behavior, 7(9), 1082-1083
Arulselvan, P., Wen, C.-C., Lan, C.-W., Chen, Y.-H., Wei, W.-C., and Yang, N.-S.* (2012) Dietary administration of scallion extract effectively inhibits colorectal tumor growth: Cellular and molecular mechanisms. PLoS One, 7(9), e44658
M. Tsednee, Y. W. Mak, Y. R. Chen and K. C. Yeh* (2012) A sensitive LC-ESI-Q-TOF-MS method reveals novel phytosiderophores and phytosiderophore–iron complexes in barley. New Phytologist, 195(4), 951-961
M. Tsednee, Y.-W. Mak, Y.-R. Chen and K.-C. Yeh* (2012) A sensitive LC-ESI-Q-TOF-MS method for the detection of phytosiderophores and their iron complexes in roots. New Phytologist, 195(4), 951-961
F.-M. An , M.-T. Chan*. (2012) Transcriptome-wide characterization of miRNA-directed and non-miRNA-directed endonucleolytic cleavage using degradome analysis under low ambient temperature in Phalaenopsis aphrodite subsp Formosana. Plant & Cell Physiology, 53, 1737-1750
Yeh CH, Kaplinsky NJ, Hu C, and Charng YY* (2012) Some like It hot, some like It warm: phenotyping to explore thermotolerance diversity. Plant Science, 195, 10-23
Shu Wei Chang, Pei Ting Liu, Ling Chih Hsu, Chin Shuh Chen, Jei Fu Shaw (2012) Integrated biocatalytic process for trehalose production and separation from rice hydrolysate using a bioreactor system. FOOD CHEMISTRY, 134(4), 1745-1753
C.-W. Li, S.-H. Lee, P.-S. Chieh, C.-S. Lin, Y.-C. Wang, M.-T. Chan* (2012) Arabidopsis root-abundant cytosolic methionine sulfoxide reductase B genes MsrB7 and MsrB8 are involved in tolerance to oxidative stress. Plant & Cell Physiology, 53, 1707-1719
Chen, H.-M., Wang P.-H., Chen S.-S., Wen, C.-C., Chen Y.-H., Yang W.-C., and Yang N.-S.* (2012) Shikonin induces immunogenic cell death in tumor cells and enhances dendritic cell-based cancer vaccine. Cancer Immunology Immunotherapy, 61(11), 1989-2002
Hung SW, Chiu CF, Chen TA, Chu CL, Huang CC, Shyur LF, Liang CM*, and Liang SM* (2012) Recombinant Viral Protein VP1 Suppresses HER-2 Expression and Migration/Metastasis of Breast Cancer. BREAST CANCER RESEARCH AND TREATMENT, 136(1), 89-105
Mercuriani, I.S., Purwantoro, A., Moeljopawiro, S., Jang, S. and Semiarti, E. (2012) Selection of Phalaenopsis amabilis L. Blume Orchid Resistance to Hygromycin. Indonesian Journal of Biotechnology, 17(2), 107-113
Ho, C-Y., Chang, J.-J., Lee, S.-C., Chin, T-.Y., Shih, M.-C. , Li, W.-H., and *Huang, C.-C. (2012) Development of cellulosic ethanol production process vis co-culturing of artificial cellulosomal Bacillus and kefir yeast. Applied Energy, 100, 27-32