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Published Papers

Huang, M.-Z.; Cheng, S.-C.; Cho, Y.-T.; Shiea, J.* (2011) Ambient Ionization Mass Spectrometry: A Tutorial. Anal. Chim. Acta, 702, 1-15
Cheng, S.-C.; Huang, M.-Z.; Shiea, J.* (2011) Thin Layer Chromatography/Mass Spectrometry. J. Chromatogr. A, 1218, 2700-2711
Tsay, Y.F., Ho, C.H., Chen, H.Y., & Lin, S.H. (2011) Integration of nitrogen and potassium signaling. Annual review of plant biology, 62, 207–226.
Wen, C.-C.#, Shyur, L.-F.#, Jan, J.-T.#, Liang, P.-H., Kuo, C.-J., Arulselvan, P., Wu, J.-B., Kuo, S.-C., and Yang, N.-S. (2011) Traditional Chinese medicine herbal extracts of Cibotium barometz, Gentiana scabra, Dioscorea batatas, Cassia tora, and Taxillus chinensis inhibit SARS-CoV replication. Journal of Traditional and Complementary Medicine, 1, 41-50
Wen-Chi Wei, Sheng-Yen Lin, Yi-Jyun Chen, Chih-Chun Wen, Chiung-Yao Huang, Arulselvan Palanisamy, Ning-Sun Yang and Jyh-Horng Sheu (2011) Topical application of marine briarane-type diterpenes effectively inhibits 12-O-tetradecanoylphorbol-13-acetate-induced inflammation and dermatitis in murine skin. Journal of Biomedical Science, 18, 94
Yang, C.-Y., Hsu, F.-C., Li, J.-P., Wang, N.N., and Shih, M.-C. (2011) The AP2/ERF transcription factor HIF1 modulates ethylene responses during hypoxia in Arabidopsis . Plant Physiology, 156, 202-212
Yang FL, Yang YL, Liao PC, Chou JC, Tsai KC, Yang AS, Sheu F, Lin TL, Hsieh PF, Wang JT, Hua KF, Wu SH* (2011) Structure and immunological characterization of the capsular polysaccharide of a pyrogenic liver abscess caused by Klebsiella pneumoniae: activation of macrophages through Toll-like receptor 4. The Journal of biological chemistry, 286(24), 21041-21051
Yang FL, Yang YL, Wu SH* (2011) Structure and function of glycolipids in thermophilic bacteria. Advances in Experimental Medicine and Biology, 705, 367-380
Tsai, L.-C., Hsiao, C.-H., Liu, W.-Y., Yin, L.-M., and Shyur, L.-F. (2011) Structural basis for the inhibition of 1,3-1,4-β-D-glucanase by noncompetitive calcium ion and competitive Tris inhibitors. Biochemical and Biophysical Research Communication, 407, 593-598
Wen Chih-Chun, Chen Hui-Ming, Chen Swey-Shen, Huang Li-Ting, Chang Wei-Ting, Wei Wen-Chi, Chou Li-Chen, Arulselvan Palanisamy, Wu Jin-Bin, Kuo Sheng-Chu, Yang Ning-Sun (2011) Specific microtubule-depolymerizing agents augment efficacy of dendritic cell-based cancer vaccines. Journal of Biomedical Science, 18(1), 44
Mohimani H, Yang YL, Liu WT, Hsieh PW, Dorrestein PC, Pevzner PA* (2011) Sequencing cyclic peptides by multistage mass spectrometry. Proteomics, 11(18), 3642-3650
Wang, T.-Y., Chen, H.-L., Lu, M.-Y., Chen, Y.-C., Sung, H.-M., Mao, W.-C., Cho, H.-Y., Ke, H.-M., Hwa, T.-Y., Ruan, S.-K., Hong, K.-Y., Wu, Y.-C., Tsai, T.-W., Li, W.-H., Shih, M.-C. (2011) Omics approach accelerates gene hunting from novel microbes: Functional characterization of cellulases identified from Neocallimastix patriciarum w5 by transcriptome and secretome. Biotechnology for Biofuels, 4, 24
Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, Gelhaye E, Goldberg J, Grabherr MG, Kodira CD, Kohler A, Kues U, Lindquist EA, Lucas SM, Mago R, Mauceli E, Morin E, Murat C, Pangilinan JL, Park R, Pearson M, Quesneville H, Rouhier N, Sakthikumar S, Salamov AA, Schmutz J, Selles B, Shapiro H, Tanguay P, Tuskan GA, Henrissat B, Van de Peer Y, Rouze P, Ellis JG, Dodds PN, Schein JE, Zhong S, Hamelin RC, Grigoriev IV, Szabo LJ, Martin F (2011) Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Sciences of the United States of America, 108(22), 9166-9171
Lin, C.-W.*, Wu, C-H., Tran, D.-T., Shih, M.-C., Li, W.-H., Wu, C.F. (2011) Mixed culture fermentation from lignocellulosic materials using thermophilic lignocellulose-degrading anaerobes . PROCESS BIOCHEMISTRY, 46, 489-493
Hsu FC, Chou MY, Peng HP, Chou SJ, Shih MC (2011) Insights into hypoxic systemic responses based on analyses of transcriptional regulation in Arabidopsis. PloS one, 6(12), e28888
Hwu JR, Hsu CI, Hsu MH, Liang YC, Huang RC, Lee YC. (2011) Glycosylated nordihydroguaiaretic acids as anti-cancer agents. Bioorganic & medicinal chemistry letters, 21(1), 380-382.
Wang TY, Chen HL, Lu MY, Chen YC, Sung HM, Mao CT, Cho HY, Ke HM, Hwa TY, Ruan SK, Hung KY, Chen CK, Li JY, Wu YC, Chen YH, Chou SP, Tsai YW, Chu TC, Shih CC, Li WH, Shih MC (2011) Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses. Biotechnology for biofuels, 4, 24
Su, P.-F., Li, C.-J., Hsu, C.-C., Benson, S., Wang, S.-Y., Chan, S. I., Wu, S.-H., Huang, W.-C., Shyur, L.-F.*, and Yang, N.-S.* (2011) Dioscorea phytocompounds enhance murine splenocyte proliferation ex vivo and improve regeneration of bone marrow cells in vivo. Evidence-based Complementary and Alternative Medicine, 44572
V. Shanmugam, J.-C. Lo, C.-L. Wu, S.-L. Wang, C.-C. Lai, E. Connolly, J.-L. Huang and K.-C. Yeh* (2011) Differential expression and regulation of iron regulated metal transporters in Arabidopsis halleri and Arabidopsis thaliana – the role in zinc tolerance. New Phytologist, 190, 125-137
Chancerel E, Lepoittevin C, Le Provost G, Lin YC, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio JM, Chaumeil P, Garnier-Gere P, Boury C, Grivet D, Gonzalez-Martinez SC, Rouze P, Van de Peer Y, Neale DB, Cervera MT, Kremer A, Plomion C (2011) Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine. BMC Genomics, 12, 368
Su CL, Chao YT, Alex Chang YC, Chen WC, Chen CY, Lee AY, Hwa KT, Shih MC (2011) De novo Assembly of Expressed Transcripts and Global Analysis of Phalaenopsis aphrodite Transcriptome. Plant & Cell Physiology, 52, 1501–1514
Jeng, W.-Y., Wang, N.-C., Lin, C.-T., Shyur, L.-F., and Wang, H.-J. A. (2011) Crystal structures of the laminarinase catalytic domain from Thermotoga maritima MSB8 in complex with inhibitors: essential residues for β-1,3 and β-1,4 glucan selection. Journal of Biological Chemistry, 286, 45030-45040
Shen MY, Liu YJ, Don MJ, Liu HY, Chen ZW, Mettling C, Corbeau P, Chiang CK, Jang YS, Li TH, Young P, Chang CL, Lin YL, Yang WC (2011) Combined phytochemistry and chemotaxis assays for identification and mechanistic analysis of anti-inflammatory phytochemicals in Fallopia japonica. PloS one, 6(11), e27480
Ou BR, Jiang MJ, Lin CH, Liang YC, Lee KJ, Yeh JY. (2011) Characterization and expression of chicken selenoprotein W. Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine, 24(2), 323-333.
Lin MH, Yang YL, Chen YP, Hua KF, Lu CP, Sheu F, Lin GH, Tsay SS, Liang SM, Wu SH* (2011) A novel exopolysaccharide from the biofilm of Thermus aquaticus YT-1 induces the immune response through Toll-like receptor 2. The Journal of biological chemistry, 286(20), 17736-17745
Kersten RD, Yang YL, Xu Y, Cimermancic P, Nam SJ, Fenical W, Fischbach MA, Moore BS, Dorrestein PC* (2011) A mass spectrometry-guided genome mining approach for natural product peptidogenomics. Nature chemical biology, 7(11), 794-802
Li, C.-W., Sanjaya, Hsieh T.-H., You, S.-J., and Chan, M.-T.* (2011) Tomato RAV transcription factor is a pivotal modulator involved in the AP2/EREBP-mediated defense pathway. Plant Physiology, 156, 213–227.
Hsu, C.-T., Liao, D.-C., Wu, F.-H, Shen, S.-C., Chou, S.-L., Yang, C.-H., Chan, M.-T*., Lin, C.-S.* (2011) Integration of molecular biology tools to obtain flowers abundantly expressed gene information in Oncidium Grower Ramsey . BMC Plant Biology, 11, 60
Hsu CT, Liao DC, Wu FH, Liu NT, Shen SC, Chou SJ, Tung SY, Yang CH, Chan MT*, Lin CS* (2011) Integration of molecular biology tools for identifying promoters and genes abundantly expressed in flowers of Oncidium Gower Ramsey. BMC Plant Biology, 11, 60
Shyur, L.-F.*, Huang, C.-C., Hsu, Y.-Y., Cheng, Y.-W., Yang, S.-D. (2011) A sesquiterpenol extract potently suppresses inflammation in macrophages and mice skin and prevents chronic liver damage in mice through JNK-dependent HO-1 expression. Phytochemistry, 72(4-5), 391-399
Liu HC, Liao HT, and Charng YY* (2011) The role of class A1 heat shock factors (HSFA1s) in response to heat and other stresses in Arabidopsis. Plant Cell & Environment, 34(5), 738-751
An, F.-M. An, Hsiao, S.-R., and Chan, M.-T.* (2011) Sequencing-based approaches reveal low ambient temperature-responsive and tissue-specific microRNAs in Phalaenopsis orchid. PLoS One, 6(5), e18937
Chuang, HH; Chen, PT ; Wang, WN; Chen, YT; Shaw, JF (2011) Functional Proteomic Analysis of Rice Bran Esterases/Lipases and Characterization of a Novel Recombinant Esterase. Journal of Agricultural and Food Chemistry, 59(5), 2019-2025
Su PF, Li CJ, Hsu CC, Benson S, Wang SY, Chan SI, Wu SH, Huang WC, Shyur LF*, Yang NS* (2011) Dioscorea phytocompounds synergistically enhance interleukin-2-mediated murine splenocyte proliferation ex vivo and improve regeneration of bone marrow cells in vivo. Evidence-based Complementary and Alternative Medicine, 2011, 731308
Lin MH, Yang YL, Chen YP, Hua KF, Lu CP, Sheu F, Lin GH, Tsay SS, Liang SM*, Wu SH* (2011) A novel exopolysaccharide from the biofilm of thermus aquaticus YT-1 induces the Immune response through toll-like receptor 2. Journal of Biological Chemistry, 286(20), 17736-17745
Wen CC, Chen HM, Chen SS, Huang LT, Chang WT, Wei WC, Chou LC, Arulselvan P, Wu JB, Kuo SC, Yang NS* (2011) Specific microtubule-depolymerizing agents augment effcacy of dendritic cell-based cancer vaccine. Journal of Biomedical Science, 18(1), 44
Tzyy-Jen Chiou*, Shu-I Lin (2011) Signaling network in sensing phosphate availability in plants. ANNUAL REVIEW OF PLANT BIOLOGY, 62 (1), 185-206
Chang, SW; Li, CF; Lee, GC; Yeh, T; Shaw, JF (2011) Engineering the Expression and Biochemical Characteristics of Recombinant Candida rugosa LIP2 Lipase by Removing the Additional N-Terminal Peptide and Regional Codon Optimization. Journal of Agricultural and Food Chemistry, 59(12), 6710-6719
Kumar, KJS; Chu, FH; Hsieh, HW; Liao, JW; Li, WH; Lin, JCC ; Shaw, JF; Wang, SY (2011) Antroquinonol from ethanolic extract of mycelium of Antrodia cinnamomea protects hepatic cells from ethanol-induced oxidative stress through Nrf-2 activation. Journal of Ethnopharmacology, 136(1), 168-177
Tzu-Yin Liu, Kyaw Aung, Ching-Ying Tseng, Tzu-Yun Chang, Ying-Shin Chen, Tzyy-Jen Chiou* (2011) Vacuolar Ca2+/H+ Transport Activity Is Required for Systemic Phosphate Homeostasis Involving Shoot-to-Root Signaling in Arabidopsis. Plant Physiology, 156 (3), 1176-1189
Wanhui Kim, Hae Ahn, Tzyy-Jen Chiou, Ji Ahn* (2011) The role of the miR399-PHO2 module in the regulation of flowering time in response to different ambient temperatures in Arabidopsis thaliana. MOLECULES AND CELLS, 32 (1), 83-88
Hui-Fen Kuo, Tzyy-Jen Chiou* (2011) The Role of miRNAs in Phosphorus Deficiency Signaling. Plant Physiology, 156 (3), 1016-1024
Lin, TY; Chen, CY; Chien, SC; Hsiao, WW; Chu, FH; Li, WH; Lin, CC; Shaw, JF; Wang, SY (2011) Metabolite Profiles for Antrodia cinnamomea Fruiting Bodies Harvested at Different Culture Ages and from Different Wood Substrates. Journal of Agricultural and Food Chemistry, 59(14), 7626-7635
Wu, TT; Lin, SC; Shaw, JF (2011) Integrated process for the purification and immobilization of recombinant trehalose synthase for trehalose production. PROCESS BIOCHEMISTRY, 46(7), 1481-1485
Chen TA, Wang JL, Hung SW, Chu CL, Cheng YC, Liang SM* (2011) Recombinant VP1, an Akt inhibitor, suppresses progression of hepatocellular carcinoma by inducing apoptosis and modulation of CCL2 production. PLoS One, 6(8), e23317
C.-C. Chen, Y.-Y. Chen, I-C. Tang, H.-M. Liang, C.-C. Lai, J.-M. Chiou and K.-C. Yeh* (2011) Arabidopsis SUMO E3 ligase SIZ1 is involved in excess copper tolerance. Plant Physiology, 156(8), 2225-2234
Yuan WC, Lee YR, Huang SF, Lin YM, Chen TY, Chung HC, Tsai CH, Chen HY, Chiang CT, Lai CK, Lu LT, Chen CH, Gu DL, Pu YS, Jou YS, Lu KP, Hsiao PW, Shih HM, and Chen RH*. (2011) A Cullin3-KLHL20 ubiqutin ligase-dependent pathway targets PML to amplify HIF-1 signaling and tumor hypoxia responses. CANCER CELL, 20, 214-228
Yin SY, Wang CY, YangNS* (2011) Interleukin-4 enhances trafficking and functional activities of GM-CSF-stimulated mouse myeloid-derived dendritic cells at late differentiation stage. Experimental Cell Research, 317(15), 2210-2221
Chiu YT, Lin CS, Chang C (2011) In vitro fruiting and seed production in Erycina pusilla. Propagation of Ornamental Plants, 11(3), 131-136
C-C Chen, Y-Y Chen and K-C Yeh* (2011) Effect of Cu content on the activity of Cu/ZnSOD1 in the arabidopsis SUMO E3 ligase siz1 mutant. Plant Signaling & Behavior, 6(10), 1428-1430
Hou, C.-C., Huang, C.-C., and Shyur, L.-F.* (2011) Echinacea alkamides prevent lipopolysaccharide/D-galactosamineinduced acute hepatic injury through JNK pathway-mediated HO-1 expression. Journal of Agricultural and Food Chemistry, 59, 11966-11974
Li-Chiun Lee,§, Chih-Chung Yen,||,= , Conmar C. Malmis,#, Long-Fang Chen†, Jen-Chieh Chen, Guan-Chiun Lee‡,*, and Jei-Fu Shaw,§,* (2011) Characterization of codon optimized recombinant Candida rugosa lipase 5 (LIP5). Journal of Agricultural and Food Chemistry, 59(19), 10693-10698
H. C. Tseng, H. W. Kao, M. R. Ho, Y. R. Chen, T. W. Lin, P. C. Lyu and W. C. Lin* (2011) Cytoskeleton network and cellular migration modulated by nuclear-localized receptor tyrosine kinase ROR1. Anticancer research, 31(12), 4239-4249
Yeh SH, Lin CS, Wu FH, Wang AY (2011) Analysis of the expression of BohLOL1, which encodes an LSD1-like zinc finger protein in Bambusa oldhamii. Planta, 234(6), 1179-1189
Tai-Na Wu, Kun-Hsien Lin, Ya-Jen Chang, Jing-Rong Huang, Jing-Yan Cheng, Alice L. Yu*, and Chi-Huey Wong* (2011) Avidity of CD1d-ligand-receptor ternary complex contributes to Th1 polarization and anticancer efficacy. PNAS, USA, 108, 17275-17280
Betsuyaku S, Sawa S, Yamada M (2011) The Function of the CLE peptides in Plant Development and Plant-Microbe Interactions. Arabidopsis Book, 2011;9, e0149