Published Papers
| Published Papers (2023-06) Hypoxia response protein HRM1 modulates the activity of mitochondrial electron transport chain in Arabidopsis under hypoxic stress more New Phytologist | |
| Published Papers (2023-01) Sugars and sucrose transporters in pollinia of Phalaenopsis aphrodite (Orchidaceae) more Journal of Experimental Botany | |
| Published Papers (2022) Evaluation of the Antifungal Activities of Photorhabdus akhurstii and Its Secondary Metabolites against Phytopathogenic Colletotrichum gloeosporioides more Journal of Fungi | |
| Published Papers (2022) Comparative genomics of three Colletotrichum scovillei strains and genetic analysis revealed genes involved in fungal growth and virulence on chili pepper more Frontiers in Microbiology | |
| Published Papers (2022) DNA-free CRISPR-Cas9 gene editing of tetraploid tomatoes using protoplast regeneration more Plant Physiology | |
| Published Papers (2021) Efficient and Economical Targeted Insertion in Plant Genomes via Protoplast Regeneration more The CRISPR journal | |
| Published Papers (2021) Energy and sugar signaling during hypoxia more The New phytologist | |
| Published Papers (2021) CaNRT2.1 is required for nitrate but not nitrite uptake in chili pepper pathogen Colletotrichum acutatum. more Frontiers in Microbiology | |
| Published Papers (2020) Blue Light Acclimation Reduces the Photoinhibition of Phalaenopsis aphrodite (Moth Orchid) more International Journal of Molecular Sciences | |
| Published Papers (2020) Blue Light Mediates Chloroplast Avoidance and Enhances Photoprotection of Vanilla Orchid more International Journal of Molecular Sciences | |
| Published Papers (2020) Whole Genome Sequencing and Tn5-Insertion Mutagenesis of Pseudomonas taiwanensis CMS to Probe Its Antagonistic Activity Against Rice Bacterial Blight Disease more International Journal of Molecular Sciences | |
| Published Papers (2019) Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence more Proceedings of the National Academy of Sciences of the United States of America | |
| Published Papers (2019) The SnRK1-eIFiso4G1 signaling relay regulates the translation of specific mRNAs in Arabidopsis under submergence more The New phytologist | |
| Published Papers (2019) Environmental biosafety assessment on transgenic Oncidium orchid modified by RNA interference of Phytoene Synthase genes more Plant Biotechnology | |
| Published Papers (2019) Segmental and tandem chromosome duplications led to divergent evolution of the chalcone synthase gene family in Phalaenopsis orchids more Annals of botany | |
| Published Papers (2018) Chromosome-level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding more Plant Biotechnology Journal | |
| Published Papers (2018) Application of protoplast technology to CRISPR/Cas9 mutagenesis: from single-cell mutation detection to mutant plant regeneration more Plant Biotechnology Journal | |
| Published Papers (2017) Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids more The Plant journal : for cell and molecular biology | |
| Published Papers (2017) Orchidstra 2.0-A Transcriptomics Resource for the Orchid Family more Plant & Cell Physiology | |
| Published Papers (2017) Community recommendations on terminology and procedures used in flooding and low oxygen stress research more The New phytologist | |
| Published Papers (2016) Transcriptome-wide analysis of the MADS-box gene family in the orchid Erycina pusilla more Plant Biotechnology Journal | |
| Published Papers (2016) Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence more Journal of Experimental Botany | |
| Published Papers (2016) Involvement of type VI secretion system in secretion of iron chelator pyoverdine in Pseudomonas taiwanensis more Scientific reports | |
| Published Papers (2016) Ethylene-Regulated Glutamate Dehydrogenase Fine-Tunes Metabolism during Anoxia-Reoxygenation more Plant Physiology | |
| Published Papers (2015) The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family more Scientific reports | |
| Published Papers (2015) NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss more BMC Plant Biology | |
| Published Papers (2015) Integrating an algal beta-carotene hydroxylase gene into a designed carotenoid-biosynthesis pathway increases carotenoid production in yeast more Bioresource Technology | |
| Published Papers (2014) BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development more BMC Plant Biology | |
| Published Papers (2014) Ethylene plays an essential role in the recovery of Arabidopsis during post-anaerobiosis reoxygenation more Plant Cell & Environment | |
| Published Papers (2014) Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite more Plant Molecular Biology | |
| Published Papers (2014) Characterization of an Insecticidal Toxin and Pathogenicity of Pseudomonas taiwanensis against Insects more PLoS pathogens | |
| Published Papers (2013) Systematic screening of glycosylation- and trafficking-associated gene knockouts in Saccharomyces cerevisiae identifies mutants with improved heterologous exocellulase activity and host secretion more BMC Biotechnology | |
| Published Papers (2013) Plant defense after flooding more Plant Signaling & Behavior | |
| Published Papers (2013) Catalog of Erycina pusilla miRNA and categorization of reproductive phase-related miRNAs and their target gene families more Plant Molecular Biology | |
| Published Papers (2013) Assembling a cellulase cocktail and a cellodextrin transporter into a yeast host for CBP ethanol production more Biotechnology for biofuels | |
| Published Papers (2013) Orchidstra: an integrated Orchid functional genomics database" more Plant Cell and Physiology | |
| Published Papers (2013) Global transcriptome analysis and identification of a CONSTANS-like gene family in the orchid Erycina pusilla more Planta | |
| Published Papers (2013) Submergence confers immunity mediated by the WRKY22 transcription factor in Arabidopsis more Plant Cell | |
| Published Papers (2013) A Modified ABCDE Model of Flowering in Orchids Based on Gene Expression Profiling Studies of the Moth Orchid Phalaenopsis aphrodite more PloS one | |
| Published Papers (2012) Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding more PLoS One | |
| Published Papers (2012) A highly efficient β-glucosidase from a buffalo rumen fungus Neocallimastix patriciarum W5 Biotechnol for Biofuel more Biotechnology for Biofuels | |
| Published Papers (2012) PGASO: A synthetic biology tool for engineering a cellulolytic yeast more Biotechnology for Biofuels | |
| Published Papers (2012) Development of cellulosic ethanol production process vis co-culturing of artificial cellulosomal Bacillus and kefir yeast more Applied Energy | |
| Published Papers (2011) The AP2/ERF transcription factor HIF1 modulates ethylene responses during hypoxia in Arabidopsis more Plant Physiology | |
| Published Papers (2011) Omics approach accelerates gene hunting from novel microbes: Functional characterization of cellulases identified from Neocallimastix patriciarum w5 by transcriptome and secretome more Biotechnology for Biofuels | |
| Published Papers (2011) Mixed culture fermentation from lignocellulosic materials using thermophilic lignocellulose-degrading anaerobes more PROCESS BIOCHEMISTRY | |
| Published Papers (2011) Insights into hypoxic systemic responses based on analyses of transcriptional regulation in Arabidopsis more PloS one | |
| Published Papers (2011) Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses more Biotechnology for biofuels | |
| Published Papers (2011) De novo Assembly of Expressed Transcripts and Global Analysis of Phalaenopsis aphrodite Transcriptome more Plant & Cell Physiology | |
| Published Papers (2009) Roles of trans and cis variation in yeast intraspecies evolution of gene expression more Molecular biology and evolution | |
| Published Papers (2008) Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast more Molecular biology and evolution | |
| Published Papers (2007) Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35 more Phytochemistry | |
| Published Papers (2007) Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors more Genome Research | |
| Published Papers (2006) Arabidopsis thaliana beta-Glucosidases BGLU45 and BGLU46 hydrolyse monolignol glucosides more Phytochemistry | |
| Published Papers (2006) An extracellular exo-beta-(1,3)-glucanase from Pichia pastoris: purification, characterization, molecular cloning, and functional expression more Protein expression and purification | |
| Published Papers (2005) Transcription factor families have much higher expansion rates in plants than in animals more Plant Physiology | |
| Published Papers (2005) The GUS reporter-aided analysis of the promoter activities of Arabidopsis ACC synthase genes AtACS4, AtACS5, and AtACS7 induced by hormones and stresses more Journal of Experimental Botany | |
| Published Papers (2005) Gene expression and microscopic analysis of Arabidopsis exposed to chloroacetanilide herbicides and explosive compounds A phytoremediation approach more Plant Physiology | |
| Published Papers (2005) Differential expression of genes encoding 1-aminocyclopropane-1-carboxylate synthase in Arabidopsis during hypoxia more Plant Molecular Biology | |
| Published Papers (2004) [Promoter specificity of LE-ACS6 gene in LE-ACS6::GUS transgenic arabidopsis plants] more Zhi wu sheng li yu fen zi sheng wu xue xue bao = Journal of plant physiology and molecular biology | |
| Published Papers (2004) Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 1 more Plant Molecular Biology | |
| Published Papers (2003) Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis more Biochemical and biophysical research communications | |
| Published Papers (2002) Mutations affecting light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis more Plant Physiology | |
| Published Papers (2002) Involvement of calcium in the anoxic signaling pathways of Arabidopsis thaliana more Journal of Plant Physiology and Molecular Biology | |
| Published Papers (2002) Arabidopsis 2010: Collaborative Project on the Functional Genomics of the Arabidopsis -Glucosidase and -Galactosidase Gene Families more Plant Physiol | |
| Published Papers (2001) Signaling events in the hypoxic induction of alcohol dehydrogenase gene in Arabidopsis more Plant Physiology | |
| Published Papers (2001) Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana more Plant Molecular Biology | |
| Published Papers (1999) Mutations affecting induction of glycolytic and fermentative genes during germination and environmental stresses in Arabidopsis more Plant physiology | |
| Published Papers (1993) Effects of blue and red light on expression of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase of Arabidopsis thaliana. more Plant physiology | |
| Published Papers (1993) Stress responses and metabolic regulation of glyceraldehyde-3-phosphate dehydrogenase genes in Arabidopsis. more Plant physiology |
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— Ming-Che Shih
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