Published Papers

Cai, Y.S. Cai, J.L., Lee, J.T., Li, Y.M., Freta Kirana Balladona, F.K., Sukma, D., and Chan, M.T.* (2023) Arabidopsis AtMSRB5 functions as a salt-stress protector for both Arabidopsis and rice. Frontiers in Plant Science, 14, 1072173
Bayubaskara, M.F., Ohme-Takagi, M., and Chan, M.T. (2023) Optimal culture conditions of Piriformospora indica for volatile compound release to promote effective plant growth. PLANT BIOTECHNOLOGY, 40, 117-121
Ochatt, S.J., Beruto, M.I., Chan, M.T., Prestwich, B.M.D., Eimert, K., Maurizio Lambardi, M., and Winkelmann, T. (2022) Biotechnology of ornamental plants: when beauty joins science—preface from the editors.. Plant Tissue and Organ Culture, 149, 497-502
Yang, C.L., Huang, Y.T., Schmidt, W., Klein, P., Chan, M.T. and Pan, I. (2022) Ethylene Response Factor109 Attunes Immunity, Photosynthesis, and Iron Homeostasis in Arabidopsis Leaves.. Frontiers in Plant Science, 13, 492
Sanjaya, I.P.W., Sudarsono, Chan, M.T., and Sukma, D. (2021) Relationship of resistance-related enzyme activities and salicylic acid contents in Phalaenopsis species with different levels of resistance to Dickeya dadantii.. Journal of Horticulture Research, 29, 31-34
Sukma, D., Elina, J., Raynalta, E., Aisyahi, S., Aziz, S.A., Sudarsono, and Chan, M.T. (2021) Analysis of genetic diversity in Phalaenopsis orchids with single nucleotide polymorphisms and SNAP markers derived from the Pto Gene.. SABRAO Journal of Breeding & Genetics, 53, 620-632
Sanjaya, I.P.W., Sukma, D., Sudarsono, and Chan. M.-T. (2020) Effect of genotype, concentration and timing of salicylic acid application to Phalaenopsis against Dickeya dadantii infection.. Biodiversitas Journal of Biological Diversity, 21, 4317-4324
Tsai, H.J., Shao, K.H., MT Chan, M.T. Cheng, C.P., Yeh, K.W., Oelmüller, R., and Wang, S.J.* (2020) Piriformospora indica symbiosis improves water stress tolerance of rice through regulating stomata behavior and ROS scavenging systems.. Plant Signaling & Behavior, 15, 1722447
Karolina Heyduk, Michelle Hwang, Victor A. Albert, Katia Silvera, Tianying Lan, Kimberly M. Farr, Tien-Hao Chang, Ming-Tsair Chan, Klaus Winter, and Jim Leebens-Mack* (2019) Altered Gene Regulatory Networks Are Associated With the Transition From C3 to Crassulacean Acid Metabolism in Erycina (Oncidiinae: Orchidaceae). Frontiers in Plant Science, 1.763888889
Kah Wee Koh, Shu-Hong Lee, Ho-Ku Chen, Chia-Yen Chang, and Ming-Tsair Chan* (2018) Phalaenopsis flowering locus VE regulates floral organ maturation. Plant Cell Reports, 37(3), 467-482
Hsiao, P.-Y., Cheng, C.-P., Koh, K.W. and Chan, M.-T.* (2017) The Arabidopsis defensin gene, AtPDF1.1, mediates defence against Pectobacterium carotovorum subs. carotovorum via an iron-withholding defence system.. SCIENTIFIC REPORTS, 6.663194444
Lai, C.-P., Huang, L.-M., Chen, L.-F.O., Chan, M.-T., and Shaw, J.-F.* (2017) Genome-wide analysis of GDSL-type esterases/lipases in Arabidopsis. Plant Molecular Biology, 95(1-2),181–197
Chen, HM., Lin, CY ., Tsai, WS., Kenyon, L ., Chan, MT ; Yen, JY., Chang, SY ., de la Pena, R., and Schafleitner, R., (2016) Resistance to viral yellow leaf curl in tomato through RNAi targeting two Begomovirus species strains. JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY, 25, 199-207
Ting, C.-K., Lin, C.-S., Chan, M.-T., Chen, J.-W., Chuang, S.-Y., Huang, S.-Y.* (2016) A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing. PLoS ONE, 11(11),e0166721
Ruhlman, T.A.#, Chang, W.-J#., Chen, J.J.W.#,, Huang, Y.-T.#, Chan, M.-T., Jin Zhang, Liao, D.-C., Blazier1, J.C., Jin, X.,, Shih, M.-C., Robert K Jansen, R.K., and Lin, C.S.* (2015) NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss. BMC Plant Biology, 15, 100
Lin, C.S.*, Hsu, C.T., Liao, D.C., Chang, W.J., Chou, M.L., Huang, Y.T., Chen, J.J.W, Ko, S.S., Chan, M.T. , and Shih, M.C.* (2015) Transcriptome-wide analysis of the MADS-box gene family in the orchid Erycina pusilla. Plant Biotechnology Journal, 14(1), 284-298
Lin, C.-S*#., Chen, J. J.-W. #, Huang, Y.-T. #,Chan, M.-T. , Daniell, H. #., Chang, W.-J., Hsu, C.-T., Liao, D.-C., Wu, F.-H., Lin, S.-Y., Liao, C.-F., Deyholos, M.K., Wong, G. K.-S, Albert, V.A., Chou, M.-L., Chen, C.-Y., and Shih, M.-C.* (2015) The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family. Scientific Reports, 5, 9040
Adin, G., Yucel, M., Chan, M.-T. and Oktem, H.A.* (2014) Evaluation of abiotic stress tolerance and physiological characteristics of potato (Solanum tuberosum L. cv. Kennebec) that heterologously expresses the rice Osmyb4 gene. . Plant Biotechnology Reports, 8, 295-304
Ko, S.-S.*, Li, M.-J., Ku, M. S.-B., Ho, Y.-C., Lin, Y.-J., Chuang, M.-H., Hsing, H.-X., Lien, Y.-C., Yang, H.-T., Chang, H.-C., and Chan M.-T. (2014) The bHLH142 transcription factor coordinates with TDR1 to modulate the expression of EAT1 and regulate pollen development in rice. Plant Cell, 26, 2486-2504
Lee, S.-H., Li, C.-W., Koh, K.W., Chuang, H.-Y., Chen, Y.-R., Lin, C.-S., and Chan, M.-T. (2014) MSRB7 reverses oxidation of GSTF2/3 to confer tolerance of Arabidopsis thaliana to oxidative stress. Journal of Experimental Botany, 65, 5049-5062
Koh, K. W., Lu, H.-C., and Chan, M-T.* (2014) Virus resistance in orchids. Plant Science, 228, 26-38
Lee, S.-H., Li, C.-W., Liau, C.-H., Chang, P.-Y., Liao, L.-J., Lin, C.-S., and Chan, M.-T. (2014) Establishment of an Agrobacterium-Mediated Genetic Transformation Procedure for the Experimental Model Orchid Erycina pusilla . PLANT CELL TISSUE AND ORGAN CULTURE, 120, 211-220
Lin, C.-S., Chen, J.J.-W., Huang, Y.-T., Chen-Tran Hsu, C.-T., Lu, H.-C., Chou, M.-L., Chen, L.-C., Liao, D.-C., Yeh, Y.-Y., Chang, S.-B., Shen, S.-C., Wu, F.-H., Shih, M.-C., and Chan, M.-T. (2013) Catalog of Erycina pusilla miRNA and categorization of reproductive phase-related miRNAs and their target gene families. Plant Molecular Biology, 82(1-2), 193-204
Li, C.-W., Lee, S.-H., and Chan, M.-T.* (2013) Utilization of the plant methionine sulfoxide reductase B genes as selectable markers in Arabidopsis and tomato transformation . PLANT CELL TISSUE AND ORGAN CULTURE, 113(3), 555-563
Chou, M.-L., Shih, M.-C., Chan, M.-T., Liao, S.-Y., Hsu, C.-T., Huang, Y.-T., Chen, J. J.-W., Liao, D.-C., Wu, F.-H., and Lin, C.-S.* (2013) Global transcriptome analysis and identification of a CONSTANS-like gene family in the orchid Erycina pusilla. Planta, 237(6), 1425-1441
I-Chun Pan, I.-C., Liao, D.-C., Wu, F.-H., Daniell, H., Singh, N.D., Chang, C., Ming-Che Shih, M.-C., Chan, M.-T.,* and Lin, C.-S.* (2012) Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding. PLoS One, 7, e34738
F.-M. An , M.-T. Chan*. (2012) Transcriptome-wide characterization of miRNA-directed and non-miRNA-directed endonucleolytic cleavage using degradome analysis under low ambient temperature in Phalaenopsis aphrodite subsp Formosana. Plant & Cell Physiology, 53, 1737-1750
C.-W. Li, S.-H. Lee, P.-S. Chieh, C.-S. Lin, Y.-C. Wang, M.-T. Chan* (2012) Arabidopsis root-abundant cytosolic methionine sulfoxide reductase B genes MsrB7 and MsrB8 are involved in tolerance to oxidative stress. Plant & Cell Physiology, 53, 1707-1719
Li, C.-W., Sanjaya, Hsieh T.-H., You, S.-J., and Chan, M.-T.* (2011) Tomato RAV transcription factor is a pivotal modulator involved in the AP2/EREBP-mediated defense pathway. Plant Physiology, 156, 213–227.
Hsu, C.-T., Liao, D.-C., Wu, F.-H, Shen, S.-C., Chou, S.-L., Yang, C.-H., Chan, M.-T*., Lin, C.-S.* (2011) Integration of molecular biology tools to obtain flowers abundantly expressed gene information in Oncidium Grower Ramsey . BMC Plant Biology, 11, 60
An, F.-M. An, Hsiao, S.-R., and Chan, M.-T.* (2011) Sequencing-based approaches reveal low ambient temperature-responsive and tissue-specific microRNAs in Phalaenopsis orchid. PLoS One, 6(5), e18937
Wu, F.-H., Chan, M.-T., Liao, D.-C., Hsu, C.-T., Lee, Y.-W., Duvall, M.R. Daniell, H. and Choun‐Sea Lin, C.S.* (2010) The complete chloroplast genome of Oncidium Gower Ramsey and evaluation of the chloroplast region for plant identification and breeding. BMC Plant Biology, 10, 68
Lin, K.-H., Lin, C.-H., Chan, M.-T., and Lo, H.-F.* (2010) Identification of flooding-response genes in eggplant roots by suppression subtractive hybridization. Plant Molecular Biology Reporter, 28, 212–221
Chan, Y.-L., Cai, D., Chan, M.-T. and Yeh, K.-W.,* (2010) Adverse effect of the chitinolytic enzyme PjCHI-1 in transgenic tomato on egg mass production and embryonic development of Meloidogyne incognita. Plant Pathology, 59, 922–930.
Yuan-Li Chan, Ai-Hwa Yang, Jen-Tzu Chen, Kai-Wun Yeh, Ming-Tsair Chan* (2010) Heterologous expression of taro cystatin protects transgenic tomato against Meloidogyne incognita infection by means of interfering sex determination and suppressing gall formation. Plant Cell Reports, 29, 231-238
Hsieh, T.-H., Li, C.-W., Su, R.-C., Sanjaya, Cheng, C.-P., Tsai, Y.-C., Chan, M.-T.* (2010) A tomato bZIP transcription factor, SlAREB, is involved in water deficit and salt stress response. Planta, 231(6), 1459-1473
Pan, I.-C., Li, C.-W., Su, R.-C., Cheng, C.-P., and Chan, M.-T.* (2010) Ectopic expression of an EAR motif deletion mutant of SlERF3 enhances tolerance to salt stress and Ralstonia solanacearum in tomato. Planta, 232,1075–1086
Fu-Hui Wu, Shu-Chen Shen, Lan-Ying Lee, Shu-Hong Lee, Ming-Tsair Chan and Choun-Sea Lin* (2009) Tape-Arabidopsis Sandwich - a simpler Arabidopsis protoplast isolation method. Plant Methods, 5, 16
Hong, Y.-F, Liu, C.-Y., Cheng, K.-J., Hour, A.-L., Chan, M.-T., Tseng T.-H., Chen, K.-Y., Shaw, J.-F., and Yu, S.-M.* (2008) The sweet potato sporamin promoter confers high-level phytase expression and improves organic phosphorus acquisition and tuber yield of transgenic potato. Plant Molecular Biology, 67, 347–361
Sanjaya, Hsiao, P., Su, R.-C., Ko, S.-S., Tong, C.-G., Yang, R.-Y. and Chan, M.-T.* (2008) Overexpression of Arabidopsis tryptophan synthase beta 1 (AtTSB1) in Arabidopsis and tomato confers tolerance to cadmium stress and protects plants against lipid peroxidation and enhanced nutritional quality. Plant Cell & Environment, 31(8), 1074-1085
Sanjaya, Chia-Wen Li, and Chan, M.-T.* (2008) Non-antibiotic selection marker genes in plant transformation: present and future prospects. Current Topics in Plant Biology, 9, 69-78
da Silva, J. A. T., Giang, D.T.T. Chan, M.-T., Sanjaya, Norikane, Chai, M.-L., Ruiz, J.-C., Penna, S., Granstrom, T., and Tanaka, M. (2007) The influence of different carbon sources, hothetero-, photoauto-, and photomixtrophic conditions on protocorm-like body organogenesis and callus formation in thin cell layer culture of hubrid Cymbidium (Orchidaceae). ORCHID SCIENCE AND BIOTECHNOLOGY, 1, 15-23
Hsiao, P., Sanjaya, Su, R.-C., da Silva, J. A. T. and Chan, M.-T.* (2007) Plant native tryptophan synthase beta 1 gene act as a non-antibiotic selection marker for plant transformation. Planta, 225, 897-906.
Lin, K.-H., Lin C.-H., Chan, M.-T., and Lo, H.-F. * (2007) Cloning and expression analysis of ascorbate peroxidase gene from eggplant under flooding stress. Botanical Studies, 48, 25-34
Chen, T.-L., Prasad, V., Lee, C.-H., Lin, K.-H., Chiueh, L.-C. and Chan, M.-T.* (2006) Validation of cDNA microarray as a prototype for throughput detection of GMOs. Botanical Studies, 47, 1-11
Da Silva*, J.A.T., Chan, M.-T., Sanjaya, Chai, M.-L. and Tanaka, M (2006) Priming abiotic factors for optimal hybrid Cymbidium (Orchidaceae) PLB and callus induction, plantlet formation,and their subsequent cytogenetic stability analysis. SCIENTIA HORTICULTURAE, 109, 368-378
Y. L. Chan, V. Prasad, Sanjaya, K. H. Chen, P. C. Liu, M. T. Chan* and C.P. Cheng* (2005) Transgenic tomato plants expressing an Arabidopsis thionin (Thi2.1) driven by fruit-inactive promoter battle against phytopathogenic attack. Planta, 221, 386 - 393
Chan, Y.-L., Prasad, V., Sanjaya, Chen, K.-H., Liu P.-C., Chan, M.-T.* and Cheng, C.-P.* (2005) Transgenic tomato expressing an Arabidopsis thionin (Thi2.1) driven by fruit-inactive promoter battles against phytopathogenic attack. Planta, 221, 386-393
Chan, Y.-L., Sanjaya, Lin, K.-H., Liao, L.-J., Chen, W.-H. and Chan, M.-T.* (2005) Gene stacking in Phalaenopsis orchid enhances dual tolerance to pathogen attack. Transgenic Research, 14, 279-288
N. S. Yang, J. H. Wang, K. F. Lin, C. Y. Wang, S. A. Kim, Y. L. Yang, M. H. Jong, T. Y. Kuo, S. S. Lai, C. R. Holland, M. T. Chan and S.M. Liang* (2005) Comparative studies of the capsid precursor polypeptide P1 and the capsid protein VP1 cDNA vectors for DNA vaccination against foot-and-mouth diseases virus. JOURNAL OF GENE MEDICINE, 7, 708-717
Y. L. Chan, and M. T. Chan* (2005) Both protein- and RNA-mediaied mechanisms involved in the resistance of Phalaenopsis transformed with viral coat protein against Cymbidium Mosic virus. Journal of Genetics and Molecular Biology, 16, 26-39
Sanjaya and M.-T. Chan* (2005) Advances in Agrobacterium Mediated Transformation in Tomato – an Overview. J Genet Mol Biol, 16, 211-224
L. J. Liao, Y. C. Pan, Y. L. Chan, Y. H. Hsu, W. H. Chen and M. T. Chan* (2004) Transgene silencing in transgenic Phalaenopsis expressing the coat protein of Cymbidium Mosaic Virus is a manifestation of RNA-mediated resistance. MOLECULAR BREEDING, 13, 229-242
Chen, T.-L., Prasad, V., Lee, C.-H., Lin, K.-H., Chiueh, L.-C. and Chan, M.-T.* (2004) Extending the cDNA microarray detection system to evaluate genetically modifications in GM soybean and in soy traditional foods. J. Food Drug Anal., 12, 259-265
Chen, T.-L., Lin, Y.-L., Lee, Y.-L., Yang, N.-S. and Chan, M.-T.* (2004) Expression of bioactive human interferon-gamma protein in transgenic rice suspension cells. TRANSGENIC RESEARCH, 13, 499-510
Liau, C.-H., Lu, J.-C., Prasad, V., Lee, J.-t. Lee, Hsiao, H.-h., You, S.-J., Huang, H.-E., Feng, T.-Y., Chen, W.-H., Yang, N.-S. and Chan, M.-T.* (2003) The Sweet Pepper Ferredoxin-like Protein (pflp) Conferred Resistance against Soft Rot Disease in Oncidium Orchid. Transgenic Res., 12, 329-336
You, S.-J., Liau, C.-H., Huang, H.-E., Feng, T.-Y., Prasad, V. Prasad, Hsiao H.-h. and Lu, J.-C., &Chan, M-T. (2003) Sweet Pepper Ferredoxin-like Protein (pflp) Gene as a Novel Selection Marker for Orchid Transformation. Planta, 217, 60-65
Chan, Y.-L., Chen, W.-H. and Chan, M-T.* (2003) Phalaenopsis Orchid Gene Transformation (I) - Optimization of Transient Gene Expression. J. Chinese. Soc. Hort. Sci., 49, 33-44
Y. L. Chan, W. H. Chen and M. T. Chan* (2003) Phalaenopsis Orchid Gene Transformation (I) - Optimization of Transient Gene Expression. J Chinese Soc Hort Sci, 49, 33-44
H. Y. Li, C. S. Chang, L. S. Lu, C. A. Liu, M. T. Chan* and Y.y. Charng* (2003) Over-expression of Arabidopsis thaliana heat shock factor gene (AtHsf1b) enhances chilling tolerance in transgenic tomato. BOTANICAL BULLETIN OF ACADEMIA SINICA, 44, 129-140
H. L. Liu, M. L. Cheng, C. G. Tong, N. S. Yang, M. T. Chan and C.P.Cheng* (2003) In silico identification and phylogenetic analysis of an unique GNAT-type of acetyltransferases in plants. J Genet Mol Biol, 14, 213-223
J. T. Lee, P. T. Yang, V. Prasad, J. F. Wu, Y. Y. Charng, T.H.D. Ho and M. T. Chan* (2003) Expression of Arabidopsis CBF1 regulated by an ABA/stress inducible promoter in transgenic tomato confers stress tolerance without affecting yield. Plant Cell & Environment, 26, 1181-1190
Liau, C.-H., You, S.-J., Prasad, V., Hsiao, H.-h., Lu J.-C., Yang, N.-S. and Chan, M.-T.* (2003) Agrobacterium-mediated Genetic Transformation of an Oncidium orchid. Plant Cell Reports, 21, 993-998
T. H. Hsieh, J. T. Lee, Y. Y. Charng and M. T. Chan* (2002) Tomato Plants Ectopically Expressing Arabidopsis CBF1 Show Enhanced Resistance to Water Deficit Stress. Plant Physiology, 130, 618-626
T. H. Hsieh, J. T. Lee, P. T. Yang, L. H. Chiu, Y. Y. Charng, Y. C. Wang and M. T. Chan (2002) Heterologous Expression of the Arabidopsis CBF1 Gene Confers Elevated Tolerance to Chilling and Oxidative Stresses in Transgenic Tomato. Plant Physiology, 129, 1086-1094
E. Lupotto, A. Reali, S. Passera and M. T. Chan (1999) Maize (Zea mays L.) elite inbred lines are susceptible to Agrobacterium tumefaceins-mediated transformation. MAYDICA, 44, 211-218
M. T. Chan and S. M. Yu* (1998) The 3' untranslated region of a rice alpha-amylase gene mediates sugar-dependent abundance of mRNA. Plant J, 15, 685-695
M. T. Chan, S. M. Yu* (1998) The 3' untranslated region of a rice alpha-amylase gene functions as a sugar-dependent mRNA stability determinant. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95, 6543-6547
A. D. Arencibia, E. R. Carmona, P. Tellez and M. T. Chan (1998) An efficient protocol for sugarcane transformation mediated by Agrobacterium tumefaciens. TRANSGENIC RESEARCH, 7, 213-222