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Oligonucleotide Properties Calculator
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A great primer
design online.
The nearest neighbor and thermodynamic calculations are done essentially as described by Breslauer et al,PNAS,83:3746-50,1986
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Primer pairing
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primer pairing test online
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Genefisher
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primer design online |
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EPD |
Eukaryotic promoter
database |
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TESS |
Transcription Element Search System |
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Transfac
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A database concerning nuclear
factors and their pathology caused by mutation (registration required ) |
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2ZIP
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Leucine zipper prediction on line
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Coiled coil prediction
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PEPCOIL : Predicts coiled coil regions (EMBOSS)
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Coils
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Predict coiled coil regions
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Zinc finger
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Zinc Finger database
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Protein
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Protein interaction
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Protein partners
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Links for
protein interaction from Finley lab, including human, mouse, yeast and
fly protein interaction databases (Y2H or proteomic databases) |
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DIP
|
Database of Interacting
Proteins |
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BIND
|
Database of Interacting
Proteins |
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BRITE
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A collection of hierarchical
classifications representing our knowledge on various aspects of biological
systems |
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Protein structure and function |
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Smart |
Simple
Modular
Architecture
ResearchTool
(Protein domain search) |
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Wise2
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The Wise2 form cmpares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors
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cDNA and genomic clones
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Human
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BCRC
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cDNA clone provision (國內IMAGE供應商)
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Pubmed
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cDNA clone provision (國內可由INVITROGEN或太所生技代理)
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Invitrogen clones
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human and mouse cDNA clone provision
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TIGER
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TIGER Human gene index
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Kazusa DNA Research Institute
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human cDNA clone provision
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cDNA clones
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Clones of small G preotrins
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Mouse
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MCI clone search
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MCI clone collection
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Incyte clones
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Human, mouse and rat cDNA clones from Agilent
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老鼠基因表達部位查詢
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TIGER mouse gene expression search
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Sequence analysis |
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Protein Sequence Analysis
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To predict protein properties from primary sequence
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DNA/RNA sequence analysis
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Analysis of DNA or RNA sequence
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Webcutter
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To cut DNA online
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Signaling Pathways
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Biocarta
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Illustrations of Signaling pathways
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KEGG
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KEGG: Kyoto Encyclopedia of Genes and Genomes including pathways, genes,
ligands and BRITE.
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IBS core
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Bioinformatics databases
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Biosinica
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A variety of bioinformatics
datbases in sinica page |
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Gene prediction
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Genescan
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To predict gene on line
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Genechip
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Stanford genomic resources
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This page provides links to various systematic analysis projects, resources, laboratories, and departments at Stanford University
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60 Human cell line array data
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NCI60 Cancer array project
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Affymetrix
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Affymetrix chips and resources
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Agilent Taiwan
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Agilent cDNA chip
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UCSC genomic center
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Goldenpath
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Softwares
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Biology Tools
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Tools developed by Sanger Institute
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Bioinformatics Lab homepage
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Assorted bioinformatics websites
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CIMR
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bioinformatics links including tools, vectors and bibliography
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Infobiogen
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French bioinformatics sites
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UMBER softwares
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University of Manchester Bioinformatics Education and Research Softwares
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