2025
N-hydroxy-pipecolic acid-mediated signal transduction and resistance requires DAWDLE. Plant Journal
, 199 (3), kiaf536
Chromosomal deletions in banana somaclonal variants reveal negative regulators of immunity underlying Fusarium wilt resistance. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
, 122(48), e2511842122
SlbHLH053 and AtMSRB5 synergistically enhance salt tolerance in transgenic tomatoes. PLANT STRESS
, 18, 101029
Transposable elements drive evolution and perturb gene expression in Brassica rapa and B. oleracea. PLANT JOURNAL
, 123 (5), e70452
Transposable elements drive evolution and perturb gene expression in Brassica rapa and B. oleracea. Plant Journal
An Intelligent Plant Watering Decision Support System for Drought Monitoring & Analysis Based on AIoT and an LSTM Time-Series Framework. INTERNET OF THINGS
2024
KASP Markers for Identifying Roselle (Hibiscus sabdariffa L.) Key Varieties Based on Genetic Polymorphisms Revealed by ddRAD-seq. HORTICULTURAE
, 10(12), 1325
Xenorhabdus taiwanensis sp. nov., a symbiotic bacterium isolated from entomopathogenic nematode Steinernema taiwanensis. RUSSIAN JOURNAL OF NEMATOLOGY
, 32, 153-162
Comparative genomic analysis uncovered phylogenetic diversity, evolution of virulence factors, and horizontal gene transfer events in tomato bacterial spot Xanthomonas euvesicatoria.. FRONTIERS IN MICROBIOLOGY
, 15, 1487917
Transgene‐free CRISPR/Cas9‐mediated gene editing through protoplast‐to‐plant regeneration enhances active compounds in <i>Salvia miltiorrhiza</i>. Plant Biotechnology Journal
, 22(6), 1549-1551
2022
Complete Genome Sequence Resource of <i>Pectobacterium colocasium</i> strain F1-1 that Causes Soft Rot Disease of Taro. Plant Disease
Whole genome resequencing and complementation tests reveal candidate loci contributing to bacterial wilt (Ralstonia sp.) resistance in tomato. Scientific Reports
, 12(1), 8374
Toward automatic plant phenotyping: starting from leaf counting. Multimedia Tools and Applications
, 81(9), 11865-11879
DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato <i>Solanum peruvianum</i> using protoplast regeneration. Plant Physiology
, 188(4), 1917-1930
DNA-free CRISPR-Cas9 gene editing of wild tetraploid tomato Solanum peruvianum using protoplast regeneration. Plant Physiology
, 188(4): 1917–1930 <a href="https://doi.org/10.1093/plphys/kiac022">DOI</a> |
<a href="https://doi.org/10.1093/plphys/kiac061"> News and Views</a> | <a href="https://academic.oup.com/plphys/issue/188/4">Cover Image</a> | <a href="https://plantae.org/choun-sea-lin-plant-physiology-first-author/"> First Author Profile</a>
Toward automatic plant phenotyping: starting from leaf counting. Multimedia Tools and Applications
, <a href="https://doi.org/10.1007/s11042-021-11886-w">https://doi.org/10.1007/s11042-021-11886-w</a>
2021
Efficient and Economical Targeted Insertion in Plant Genomes via Protoplast Regeneration. The CRISPR Journal
, 4(5), 752-760 <a href="https://doi.org/10.1089/crispr.2021.0045">DOI</a>
Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker Bacterium Xanthomonas citri subsp citri. Frontiers in Microbiology
, 12, 2605 <a href="https://www.frontiersin.org/articles/10.3389/fmicb.2021.731711/full">DOI</a>
2019
Draft Genome Assembly of the False Spider Mite Brevipalpus yothersi. Microbiology Resource Announcements
, 8(6), e01563-18 <a href="https://dx.doi.org/10.1128%2FMRA.01563-18">DOI</a>
Reference genome for the WHO reference strain for Mycobacterium bovis BCG Danish, the present tuberculosis vaccine. BMC Genomics
, 20, 561 <a href="https://doi.org/10.1186/s12864-019-5909-5">DOI</a>
Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos. SCIENTIFIC REPORTS
, 9, 11327
2018
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
, 115(46), E10970-E10978 <a href="https://doi.org/10.1073/pnas.1801437115">DOI</a>
2017
Systems genetics reveals a transcriptional network associated with susceptibility in the maize-gray leaf spot pathosystem. The Plant journal : for cell and molecular biology
, 89(4), 746-763
The Apostasia genome and the evolution of orchids. Nature
, 549(7672), 379-383
Complete Genome Sequence of Bacillus cereus C1L, a Plant Growth-Promoting Rhizobacterium from the Rhizosphere of Formosa Lily in Taiwan. Genome Announcements
, 5(46), e01290-17
Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips. IMA Fungus
, 8(2), 385-396
2016
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea. Nature
, 530(7590), 331-335
2015
The Plant Genome Integrative Explorer Resource: PlantGenIEorg. The New phytologist
, 208(4), 1149-1156
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies). PloS one
, 10(9), e0139080
Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in picea gene families. Genome Biology and Evolution
, 7(4), 1002-1015
Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays. Journal of Experimental Botany
, 66(17), 5257-5269
Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda). BMC genetics
, 16, 149
2014
miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns . Tree Genetics & Genomes
, 10, 721-737
Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations. Nature communications
, 5, 4767
in aComparative in silico analysis of EST-SSRsngiosperm and gymnosperm tree genera. BMC Plant Biology
, 14, 220
2013
The Norway spruce genome sequence and conifer genome evolution. Nature
, 497(7451), 579-584
The biosynthetic gene cluster for sophorolipids: a biotechnological interesting biosurfactant produced by Starmerella bombicola. Molecular microbiology
, 88(3), 501-509
SILAC-based proteome analysis of Starmerella bombicola sophorolipid production. Journal of proteome research
, 12(10), 4376-4392
Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature
, 499(7457), 209-213
Candida bombicola as a platform organism for the production of tailor-made biomolecules. Biotechnology and bioengineering
, 110(9), 2494-2503
2012
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. The New phytologist
, 194(4), 1001-1013
GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses. Developmental cell
, 22(3), 678-685
A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust). Molecular plant-microbe interactions : MPMI
, 25(3), 279-293
2011
Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Sciences of the United States of America
, 108(22), 9166-9171
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine. BMC Genomics
, 12, 368
2009
Open access to sequence: browsing the Pichia pastoris genome. Microbial cell factories
, 8, 53
Oil bodies and oleosins in Physcomitrella possess characteristics representative of early trends in evolution. Plant Physiology
, 150(3), 1192-1203
Genome sequence of the recombinant protein production host Pichia pastoris. Nature biotechnology
, 27(6), 561-566
2008
The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic acids research
, 36(S1), D1028-D1033
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature
, 452(7183), 88-92
2007
Detection of SNPs between Tainung 67 and Nipponbare rice cultivars . Botanical Studies
, 48, 243-253
Curated genome annotation of Oryza sativa ssp japonica and comparative genome analysis with Arabidopsis thaliana. Genome Research
, 17(2), 175-183
A rice phenomics study--phenotype scoring and seed propagation of a T-DNA insertion-induced rice mutant population. Plant Molecular Biology
, 65(4), 427-438
A rice gene activation/knockout mutant resource for high throughput functional genomics. Plant Molecular Biology
, 63(3), 351-364
A repetitive sequence specific to Oryza species with BB genome and abundant in Oryza punctata. Botanical Studies
, 48, 263-272
2005
The map-based sequence of the rice genome. Nature
, 436(7052), 793-800