2025

Pelletier JM, Chen M, Lin JY , Le B, Kirkbride RC, Hur J, Wang T, Chang SH, Olson A, Nikolov L, Goldberg RB, Harada JJ

Dissecting the cellular architecture and genetic circuitry of the soybean seed.. Proceedings of the National Academy of Sciences of the United States of America , 122(1), e2416987121

2024

Wang Yen-Ching, Hsieh Wei-Hsun, Lin Liang-Peng, He Meng-Hsun, Jhan Ya-Ting, Huang Chu-Jun, Zhan Junpeng, Chang Ching-Chun, Hsieh Tzung-Fu, Lin Jer-Young

Dissecting the temporal genetic networks programming soybean embryo development from embryonic morphogenesis to post-germination. Plant Cell Reports , 43(11), 266

Lin Jer-Young , Liu Yu-Chang, Tseng Yan-Hao, Chan Ming-Tsair, Chang Ching-Chun

TALE-based organellar genome editing and gene expression in plants. Plant Cell Reports , 43(3), 1-15

2021

Chen M, Lin JY , Wu X, Apuya NR, Henry KF, Le B, Bui AQ, Pelletier JM, Cokus S, Pellegrini M, Harada JJ, Goldberg RB*

Comparative analysis of embryo proper and suspensor transcriptomes in plant embryos with different morphologies. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA , 118(6), e2024704118

2018

Chen, M., Lin, J.Y. , Hur, J., Pelletier, J.M., Baden, R., Pellegrini, M., Harada, J., Goldberg, R.B*

Seed genome hypomethylated regions are enriched in transcription factor genes. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA , 115(35), E8315-E8322

2017

Lin JY , Le B., Chen M, Henry KF, Hur J, Hsieh TF, Chen PY, Pelletier JM , Pellegrini M, Fischer RL, Harada JJ, and Goldberg RB*

Similarity between soybean and Arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA , 114(45), E9730-E9739

2016

Iwata A, Lin JY , Gill N, and Jackson SA*

Highly distinct chromosomal structures in cowpea (Vigna unguiculata) as revealed by molecular cytogenetic analysis. Chromosome Research , 24, 197–216

Song H, Wang P, Lin JY , Bi Y, and Wang X*

Genome-wide identification and characterization of WRKY gene family in peanut. Frontiers in Plant Science , 7, 534

2015

Chung CC, Gong GC, Huang CY, Lin JY , and Lin YC*

Changes in the Synechococcus assemblage composition in the East China Sea due to flooding of the Changjiang River. MICROBIAL ECOLOGY , 70(3), 677-688

2010

Lin JY , Stupar RM, Hans C, Hyten DL, and Jackson SA*

Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris. The Plant Cell , 22(8), 2545-2561

2008

Schlueter JA, Goicoechea JL, Collura K, Gill N, Lin JY , Yu Y, Kudrna D, Zuccolo A, Vallejos CE, Munoz-Torres M, Blair MW, Tohme J, Tomkins J, McClean P, Wing RA, and Jackson SA*

BAC-end sequence analysis and a draft physical map of the common bean (Phaseolus vulgaris L.) genome. Tropical Plant Biology , 1, 40-48

2007

Schlueter JA, Lin JY , Schlueter SD, Vasylenko-Sanders IF, Deshpande S, Yi J, Siegfried M, Roe BA, Nelson RT, Scheffler BE, Jackson SA, and Shoemaker RC*

Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing. BMC Genomics , 8, 330-345

2006

Hass-Jacobus B, Futrell-Griggs M, Abernathy B, Westerman R, Goiocechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY , Walling JG, Luo MZ, Ammiraju JSS, Kudrna D, Kim HR, Ware D, Wing RA, SanMiguel P, and Jackson SA*

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. BMC Genomics , 7, 199-204

2005

Lin JY , Hass-Jacobus B, SanMiguel P, Walling JG, Yuan Y, Doyle J, Shoemaker RC, Young ND, and Jackson SA*

Pericentromeric regions of soybean (Glycine max L. Merr.) chromosomes consist of retroelements and tandemly repeated DNA and are structurally and evolutionarily labile. GENETICS , 170(3), 1221-1230

1999

Huang CJ, Lin JY , and Tsai HJ*

Two distinct c-ski cDNAs of fish, tilapia (Oreochromis aurea). MOLECULAR REPRODUCTION AND DEVELOPMENT , 54(3), 223-231