2025

Puyam Tondonba Singh, Bo-Han Hou, Yi-Heng Tsai, Yuh Tzean, Chih-Ping Chao, Po-Xing Zheng, Yao-Cheng Lin, Wei-Chiang Shen, Hsin-Hung Yeh, Ho-Ming Chen

Chromosomal deletions in banana somaclonal variants reveal negative regulators of immunity underlying Fusarium wilt resistance. Proceedings of the National Academy of Sciences , 122 (48), e2511842122

2024

Hong Syuan-Fei, Wei Wei-Lun, Pan Zhao-Jun, Yu Jia-Zhen, Cheng Shiuan, Hung Yu-Ling, Tjita Veny, Wang Hao-Ching, Komatsu Aino, Nishihama Ryuichi, Kohchi Takayuki, ( Chen Ho-Ming ), Chen Wan-Chieh, Lo Jing-Chi, Chiu Yen-Hsin, Yang Ho-Chun, Lu Mei-Yeh, Liu Li-Yu Daisy, Lin Shih-Shun

Molecular Insights into MpAGO1 and Its Regulatory miRNA, miR11707, in the High-Temperature Acclimation of <i>Marchantia polymorpha</i>. Plant And Cell Physiology , 65(9), 1414-1433

Ai-Ping Chen#, Wan-Chieh Chen#, Bo-Han Hou, Shu-Jen Chou*, Ho-Ming Chen *

Global Profiling and Analysis of 5'Monophosphorylated mRNA Decay Intermediates. Methods in molecular biology (Clifton, NJ) , 2863, 373-394

2023

Han Wan‐Yin, Hou Bo‐Han, Lee Wen‐Chi, Chan Tze‐Ching, Lin Tzu‐Hsiang, Chen Ho‐Ming *

Arabidopsis mRNA decay landscape shaped by XRN 5′‐3′ exoribonucleases. The Plant Journal , 114(4), 895-913

2022

Hou BH, Tsai YH, Chiang MH, Tsao SM, Huang SH, Chao CP, Chen HM *

Cultivar-specific markers, mutations, and chimerisim of Cavendish banana somaclonal variants resistant to Fusarium oxysporum f. sp. cubense tropical race 4. BMC Genomics , 25;23(1):470

2021

Tzean Y, Hou BH, Tsao SM, Chen HM , Cheng AP, Gamboa Chen E, Chou WY, Chao CP, Shen WC, Chen CC, Lee MC, Ashraf I, Yeh HH

Identification of MaWRKY40 and MaDLO1 as effective marker genes for tracking the salicylic acid-mediated immune response in bananas. Phytopathology , 111 (10), 1800-1810

2020

Tzean Yuh, Chang Ho-Hsiung, Tu Tsui-Chin, Hou Bo-Han, Chen Ho-Ming , Chiu Yi-Shu, Chou Wei-Yi, Chang Li, Yeh Hsin-Hung*

Engineering Plant Resistance to Tomato Yellow Leaf Curl Thailand Virus Using a Phloem-Specific Promoter Expressing Hairpin RNA. Molecular Plant-Microbe Interactions , 33(1),87-97

Lee WC, Hou BH, Hou CY, Tsao SM, Kao P, Chen HM *

Widespread Exon Junction Complex Footprints in the RNA Degradome Mark mRNA Degradation before Steady State Translation. The Plant Cell , 32(4), 904-922

2019

Tzean Y, Lee MC, Jan HH, Chiu YS, Tu TC, Hou BH, Chen HM , Chou CN, Yeh HH*

Cucumber mosaic virus-induced gene silencing in banana. Scientific reports , 9(1), 11553

2017

Yu-Yi Wu, Bo-Han Hou, Wen-Chi Lee, Shin-Hua Lu, Chen-Jui Yang, Herve Vaucheret, Ho-Ming Chen *

DCL2- and RDR6-dependent transitive silencing of SMXL4 and SMXL5 in Arabidopsis dcl4 mutants causes defective phloem transport and carbohydrate over-accumulation. The Plant Journal , 90(6), 1064-1078

2016

Cheng-Yu Hou, Wen-Chi Lee, Hsiao-Chun Chou, Ai-Ping Chen, Shu-Jen Chou, Ho-Ming Chen *

Global Analysis of Truncated RNA Ends Reveals New Insights into Ribosome Stalling in Plants. The Plant Cell , 28(10), 2398-2416

2015

Wen-Chi Lee, Shin-Hua Lu, Ming-Hsuan Lu, Chen-Jui Yang, Shu-Hsing Wu, Ho-Ming Chen *

Asymmetric bulges and mismatches determine 20-nt microRNA formation in plants. RNA biology , 12(9), 1054-66

2014

Hou CY, Wu MT, Lu SH, Hsing YI, Chen HM *

Beyond cleaved small RNA targets: unraveling the complexity of plant RNA degradome data. BMC Genomics , 15(1), 15

2012

Liu MJ., Wu S, Chen HM , Wu SH.*

Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis. Molecular Systems Biology , 8(566), 1-14

Shivaprasad PV, Chen HM , Patel K, Bond DM, Santos BA, Baulcombe DC*

A MicroRNA Superfamily Regulates Nucleotide Binding Site-Leucine-Rich Repeats and Other mRNAs. The Plant Cell , 24(3), 859-874