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Selected Recent Publications

* Tsai, K.-J., Lin, C.-Y., Ting, C.-Y. and Shih, M.-C.* (2016). Ethylene-regulated glutamate dehydrogenase fine-tunes metabolism during anoxia-reoxygenation in Arabidopsis. Plant Physiology. 172, 1548-1562.
* Chen, W.-J., Hsieh, F.-C., Liu, J.-R., Kuo, T.-Y., Chen, P.-Y., *Yang, Y.-L. and *Shih, M.-C. (2016). Type VI secretion system (T6SS) mediated secretion of pyoverdine from Pseudomonas taiwanesis inhibits growth of rice pathogen Xanthomonas oryzae pv. oryzae. Sci. Reports. 6:32950.
* Cho, H.-Y., Wen, T.-N., Wang, Y.-C. and Shih, M.-C.*. (2016). Quantitative Phosphoproteomics of Protein Kinase SnRK1 regulated protein phosphorylation in Arabidopsis under Submergence. J. Exp. Bot. 67, 2745-2760.
* Chang, J.-J., Thia, C., Lin, H.-Y. Liu, H.-L., Ho, F.-J., Wu, J.-T. Shih, M.-C., Li, W.-H. and Huang, C.-C. (2015). Integrating an algal β-carotene hydroxylase gene into a designed carotenoid-biosynthesis pathway increases carotenoid production in yeast. Bioresource Technol., 184, 2-8.
* *Lin, C.-S., Chen, J.-W., Huang, Y.-T., Chan, M.-T., Daniell, H., Chang, W.-J., Hsu, C.-T., Liao, D.-C., Wu, F.-H., Lin, S.-Y., Liao, C.-F., Deyholos, M.K., Wong, G. K.-S., Albert, V.A., Chou, M.-L., Chen, C.-Y. and *Shih, M.-C. (2015). The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family. Scentific. Reports, 5:9040.
* Ruhlman, T.A., Chang, W.-J., Chen, J.-W., Huang, Y.-T., Chan, M.-T., Zhang, J., Liao, D.-C., Blazier, J.C., Jin, X., Shih, M.-C., Jansen, R.K., and Lin, C.S. (2015). NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss. (2015). BMC Plant Biol. 15:100.
* *Lin, C.-S., Hsu, C.-T., Liao, D.-C., Chang, W.-J., Chou, M.-L., Huang, Y.-T., Chen, J. J.W., Ko, S.-S., Chan, M.-T., *Shih, M.-C. (2016). Transcriptome-wide analysis of the MADS-box gene family in the orchid Erycina pusilla. Plant Biotech. J. 14, 284-298.
* Chen, W.-J., Hsieh, F.-C., Hsu, F.-C., Tsay, Y.-F., *Liu , J.-R., and *Shih, M.-C. (2014). Characterization of insecticidal toxin and pathogenicity of Pseudomonas taiwanensis against insects. PLoS Pathogens, 10(8): e1004288.
* Tsai, K.-J., Chou, S.-J. and *Shih, M.-C. (2014). Ethylene plays an essential role in the recovery of Arabidopsis during post-anaerobiosis reoxygenation. Plant Cell & Environ. 37, 2391-2405.
* Chao, Y.-T., Su, C.-L., Chen, W-C., Jean, W.-H., Chang, Y.-C. Alex, and *Shih, M.-C. (2014). Identification, characterization, profiling and analysis of the microRNA transcriptome of moth orchid Phalaenopsis aphrodite. Plant Mol. Biol. 84:529-548.
* Shih, M.C., Chou, M.-L., Yue, J.J., Hsu, C.-T., Chang, W-J., Ko. S.-S., Liao, D.-C., Huang, Y.-T., Chen, J.-J., Yuan, J.-L., Gu, X.P., Lin, C.-S. (2014). BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development. BMC Plant Biol. 14:179.
* Hsu, F-C., Chou, M.-Y., Chou, S.-J., Li, Y.-R., Peng, H.-P., and *Shih, M.-C. (2013). Submergence confers immunity mediated by the WRKY22 transcription factor in Arabidopsis. Plant Cell 25, 2699-2713.
* Su, C.-L., Chen, W-C., Lee, A.-Y., Chen, C.-Y., Chang, Y.-C., Chao,Y.-T. and *Shih, M.-C. (2013). A modified ABCDE model for orchid floral pattern formation: gene expression profiling studies of the moth orchid Phalaenopsis aphrodite. PLoS One, 8(11): e80462.
* Chang, J.-J., Ho, F.-J., Ho, C.-Y., Wu, Y.-C., Hou, Y.-H., *Huang, C.-C., *Shih, M-C, *Li, W.-H. (2013). Assembling a cellulase cocktail and a cellodextrin transporter into a yeast host for CBP ethanol production. Biotechnol for Biofuel. 6:19. *Co-corresponding authors.
* Su, C.-L., Chao, Y.-T., Yen, S.-H., Chen,C.-Y., Chen,W., Chang, Y.-C. Alex and *Shih, M.-C. (2013). Orchidstra: an integrated Orchid functional genomics database. Plant Cell Physiol. 54(2): e11(1–11)
* Wang, T.-Y., Huang, C.-H., Chen, H.-L., Ho, P.-C., Ke, H.-M., Cho, H.-Y., Ruan, S.-K., Hong, K.-Y., Wang, I.-L., Cai, Y.-W., Sung, H.-M, *Li, W.-H., *Shih, M.-C. (2013). Systematic screening of glycosylation- and trafficking-associated gene knockouts in Saccharomyces cerevisiae identifies mutants with improved heterologous exo-cellulase activity and host secretion. BMC Biotechnology, 13:71.
* Lin, C.-S., Chen, J.-W., Huang, Y.-T., Hsu, C.-T., Lu, H.-C., Chou, M.-L., Chen, L.-C., Ou, C.-I., Liao, D.-C., Yeh, Y.-Y., Chang, S.-B., Shen, S.-C., Wu, F.-H., Shih, M.-C., Chan, M.-T. (2013). Catalog of Erycina pusilla miRNA and categorization of reproductive phase-related miRNAs and their target gene families. Plant Mol. Biol. 82:193-204.
* *Chou, M.-L., , *Shih, M.-C., Chan, M.-T., Liao, S.-Y., Hsu, C.-T., Haung, Y.-T., Chen, J.W., Liao, D.-C., Wu, F.-H., Lin, C.-S. (2013). Global transcriptome analysis and identification of a CONSTANS-like gene family in the orchid Erycina pusilla. Planta 237(6):1425-1441. *Co-first authors.
* Chang, J.-J., Thia, C., Lin, H.-Y. Liu, H.-L., Ho, F.-J., Wu, J.-T. Shih, M.-C., Li, W.-H. and Huang, C.-C. (2015). Integrating an algal β-carotene hydroxylase gene into a designed carotenoid-biosynthesis pathway increases carotenoid production in yeast. Bioresource Technol., 184, 2-8.
* Chang, J.-J., Ho, C-Y., Huang, Ho, F-J, Tsai, T-Y, Ke, H-M, Wang, C. H.-T., Chen, H-L., *Shih, M-C, *Huang, C.-C., *Li, W.-H. (2012). PGASO: A synthetic biology tool for engineering a cellulolytic yeast. Biotechnol for Biofuel. 5:53. *Co-corresponding authors.
* Chen, H.-L., Chen, Y.-C., Lu, M.-Y., Chang, J.-J., Wang, H.-T., Ke, H.-M., Wang, T.-Y., Ruan, S.-K., Wang, T.-Y., Hong, K.-Y., Cho, H.-Y., Lin, W.-T., *Shih, M.-C., and *Li, W.-H. (2012). A highly efficient β-glucosidase from a buffalo rumen fungus Neocallimastix patriciarum W5. Biotechnol for Biofuel. 5:24 *Co-corresponding authors.
* Pan, I-C, Liao, D-C., Wu, F-H., Daniell, H., Singh, N.D., Chang, C., Shih, M-C., Chan, M.-T. and Lin, C.-S. (2012). Complete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding. PLoS One 7(4):e34738.
* Ho, C-Y., Chang, J.-J., Lee, S.-C., Chin, T-.Y., Shih, M.-C. , Li, W.-H., and *Huang, C.-C. (2012). Development of cellulosic ethanol production process via co-culturing of artificial cellulosomal Bacillus and kefir yeast. Applied Energy 100, 27-32.
* Su, C.-L., Chao, Y.-T., Chang, Y.-C. Alex, Chen,W., Chen,C.-Y., Lee, A.-Y., Kee, T. H., *Shih, M.-C. (2011). De novo assembly of expressed transcripts and construction of a transcriptome database of Phalaenopsis aphrodite. Plant Cell Physiol. 52, 1501–1514.
* Yang, C.-Y., Hsu, F.-C., Li, J.-P., Wang, N.N., and Shih, M.-C. (2011). The AP2/ERF transcription factor HIF1 modulates ethylene responses during hypoxia in Arabidopsis. Plant Physiol. 156, 202-212.
* Su, C.-L., Chao, Y.-T., Chang, Y.-C. Alex, Chen,W., Chen,C.-Y., Lee, A.-Y., Kee, T. H., Shih, M.-C. (2011). De novo assembly of expressed transcripts and construction of a transcriptome database of Phalaenopsis aphrodite. Plant Cell Physiol. 52, 1501–1514.
* Wang, T.-Y., Chen, H.-L., Lu, M.-Y., Chen, Y.-C., Sung, H.-M., Mao, W.-C., Cho, H.-Y., Ke, H.-M., Hwa, T.-Y., Ruan, S.-K., Hong, K.-Y., Wu, Y.-C., Tsai, T.-W., Li, W.-H., Shih, M.-C. (2011). Omics approach accelerates gene hunting from novel microbes: Functional characterization of cellulases identified from Neocallimastix patriciarum w5 by transcriptome and secretome. Biotechnol for Biofuel. 4:24.
* Hsu, F.-C., Chou, M.-Y., Peng, H.-P., Chou, S.-J., Shih, M.-C. (2011). Insights into transcriptional regulatory pathways on systematic communication under flooding in Arabidopsis. PLoS One, Accepted.
* Hsu, F.-C., Chou, M.-Y., Peng, H.-P., Chou, S.-J., Shih, M.-C. (2011). Insights into transcriptional regulatory pathways on systematic communication under flooding in Arabidopsis. PLoS One, 6(12): e28888.
* J. J. Chang, F. J. Ho, C. Y. Ho, M. C. Shih, C. C. Huang, W. H. Li. 2012. An expression system for producing multi-enzyme complexes and uses thereof. Taiwan Patent # IA0001/ACA0063TW (Approved November, 2014)
* J. J. Chang, F. J. Ho, C. Y. Ho, M. C. Shih, C. C. Huang, W. H. Li. 2012. An expression system for producing multi-enzyme complexes and uses thereof. U.S. patent. Issue date: April 30, 2013 as Patent No. 8,431,371.
* W. H. Li, M. C. Shih, C. C. Huang, J. J. Chang, C. Y. Ho. 2012. Method for producing extracellular multiple-enzyme complexes in host cell. Taiwan patent #I444477.
* W. H. Li, M. C. Shih, C. C. Huang, J. J. Chang, C. Y. Ho. 2012. Method for producing extracellular multiple-enzyme complexes in host cell. U.S. patent. Patent No. 8,354,266. Issue date: January 15, 2013

施明哲 特聘研究員兼中研院南部院區籌備委員會主任委員


特聘研究員兼中研院南部院區籌備委員會主任委員 施明哲

* 學經歷
東海大學生物系學士 (1976)
美國愛荷華大學遺傳博士 (1978-1983)
美國哈佛大學遺傳系博士後研究 (1984-1988)
美國愛荷華大學生物系助理教授 (1988-1994)
美國愛荷華大學生物系副教授 (1994-2003)
美國愛荷華大學比較基因體中心主任 (2005-2007)
美國愛荷華大學生物系教授 (2003-2009)
中央研究院農生中心特聘研究員兼主任 (2008-2016)
中央研究院農生中心特聘研究員兼中央研究院秘書長 (2016- 至今)

* 連絡方式
TEL: (02) 2789-9403
Email: mcshih@gate.sinica.edu.tw  

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